Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22p08
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81542-11|CAB04421.1| 243|Caenorhabditis elegans Hypothetical p... 32 0.45
Z81496-12|CAB04074.1| 243|Caenorhabditis elegans Hypothetical p... 32 0.45
Z73104-2|CAA97434.1| 479|Caenorhabditis elegans Hypothetical pr... 31 0.78
U53339-6|AAA96202.1| 348|Caenorhabditis elegans Serpentine rece... 29 3.2
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z93377-3|CAB07580.1| 358|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi... 29 4.2
AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna ... 29 4.2
Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 5.5
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 28 5.5
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 28 5.5
U40946-2|AAO91682.1| 780|Caenorhabditis elegans Hypothetical pr... 27 9.6
AC006748-1|AAF60514.2| 323|Caenorhabditis elegans Serpentine re... 27 9.6
AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine r... 27 9.6
>Z81542-11|CAB04421.1| 243|Caenorhabditis elegans Hypothetical
protein F09C6.3 protein.
Length = 243
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 319 HSVAHENIIPSNGEAAGTKTLLSADHTTH*EPRQSHISHFEYNESSSESKHNGRINRPEG 498
H + E I SN G + + +T+ EPR + HF Y+ ++ + +N I+ +
Sbjct: 21 HDIRVETIANSNNIPGGNSSRIENVYTSRSEPRGNPSVHFSYDSKTTINSNNTTIDN-KR 79
Query: 499 RRRSRH 516
+R ++H
Sbjct: 80 QRTTQH 85
>Z81496-12|CAB04074.1| 243|Caenorhabditis elegans Hypothetical
protein F09C6.3 protein.
Length = 243
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 319 HSVAHENIIPSNGEAAGTKTLLSADHTTH*EPRQSHISHFEYNESSSESKHNGRINRPEG 498
H + E I SN G + + +T+ EPR + HF Y+ ++ + +N I+ +
Sbjct: 21 HDIRVETIANSNNIPGGNSSRIENVYTSRSEPRGNPSVHFSYDSKTTINSNNTTIDN-KR 79
Query: 499 RRRSRH 516
+R ++H
Sbjct: 80 QRTTQH 85
>Z73104-2|CAA97434.1| 479|Caenorhabditis elegans Hypothetical
protein K08D8.3 protein.
Length = 479
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 125 NYVATLAFFCG-ISCVTIMLKFGGFKASLNIFNSRKNGKEKTELHQGSYMTGAYRTNRDD 301
NYV A F G ++ +T+M+ G + SL ++NS+ T QG Y TN +
Sbjct: 394 NYVVRDADFTGNLTTLTVMILSKGQQVSLTVYNSKNLPPATTVSVQGDTYHIKYFTNGVN 453
Query: 302 VSGY 313
+G+
Sbjct: 454 TTGF 457
>U53339-6|AAA96202.1| 348|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 12 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 122 VNYVATLAFFCGISCVTIMLKFGGFKASLNIFNSRKNGKEKTEL 253
+NY +C +++ F GFKA LN N ++N K ++ +
Sbjct: 274 INYTVMRGVYCATPTYNLVIVFIGFKA-LNHLNFKRNNKVQSTI 316
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 209 NIFNSRKNGKEKTELHQGSYMTGAYRTNRDDVSGYVSTPSPTKTLSP 349
N ++ N + + H G ++ A+RT D+ + ST K LSP
Sbjct: 19 NCESTTSNSRRILDQHAGLPISSAFRTEASDIGHHFSTKMYFKILSP 65
>Z93377-3|CAB07580.1| 358|Caenorhabditis elegans Hypothetical
protein F13A7.7 protein.
Length = 358
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 436 FEYNESSSESKHNGRIN--RPEGRRRSRHKESFA 531
F+Y ESSS+ + NG + + +GRRR+ + S A
Sbjct: 2 FKYKESSSDDEENGEKDKEKDDGRRRTESERSNA 35
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 232 WKRENRITSGLIYDRRVSYEQRRRVWIRQ 318
WK N I Y+ + + RRRVW RQ
Sbjct: 727 WKYSNNIDGVYSYNEKAQGKARRRVWRRQ 755
>AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi
enabling proteinSID-1 protein.
Length = 776
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 337 NIIPSNGEAAGTKTLLSADHTTH*EPRQSHISHFEYNESSSESKHNGRINRPEGR 501
NII ++ + A +++ L + E R +SH E +SSE ++NG I E +
Sbjct: 338 NIIKNSRKLAPSQSNLISFSPVPSEQRDMDLSHDEQQNTSSELENNGEIPAAENQ 392
>AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna
interference defectiveprotein 1 protein.
Length = 776
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 337 NIIPSNGEAAGTKTLLSADHTTH*EPRQSHISHFEYNESSSESKHNGRINRPEGR 501
NII ++ + A +++ L + E R +SH E +SSE ++NG I E +
Sbjct: 338 NIIKNSRKLAPSQSNLISFSPVPSEQRDMDLSHDEQQNTSSELENNGEIPAAENQ 392
>Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical
protein C35A5.4 protein.
Length = 427
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 317 STPSPTKTLSPAMVKLPGRKPCCLLTTRPTKSLGNLTLATSSTMKAVPNQNTTDVSTDP 493
STPSP K +P P +KP + + ++ A S + K+ P +N+ + S P
Sbjct: 317 STPSPAKPATPTKTPTPTKKP--VENNETLSQVKTVSKALSHSPKS-PKKNSQEKSAPP 372
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +2
Query: 272 TGAYRTNRDDVSGYVSTPSPTKTLSPAMVKLPGRKP-CCLLTTRPTKS--LGNLTLATSS 442
T T S V+T PT TL+ + +P +TT P+ S +T ++SS
Sbjct: 409 TSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTSPVTSTVTSSSSS 468
Query: 443 TMKAVPNQNTTDVSTDP 493
+ +T ST P
Sbjct: 469 STTVTTPTSTESTSTSP 485
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +2
Query: 272 TGAYRTNRDDVSGYVSTPSPTKTLSPAMVKLPGRKP-CCLLTTRPTKS--LGNLTLATSS 442
T T S V+T PT TL+ + +P +TT P+ S +T ++SS
Sbjct: 409 TSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTSPVTSTVTSSSSS 468
Query: 443 TMKAVPNQNTTDVSTDP 493
+ +T ST P
Sbjct: 469 STTVTTPTSTESTSTSP 485
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 511 AISVAPRVG*YVRCV-LIRNCFHCTRSG*CEIAEALSGS 398
AIS ++G Y +C+ +IRNC H R G + + SG+
Sbjct: 132 AISDLYQIGLYNQCLKIIRNCCHTVRIGETVVTKKSSGA 170
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 511 AISVAPRVG*YVRCV-LIRNCFHCTRSG*CEIAEALSGS 398
AIS ++G Y +C+ +IRNC H R G + + SG+
Sbjct: 132 AISDLYQIGLYNQCLKIIRNCCHTVRIGETVVTKKSSGA 170
>U40946-2|AAO91682.1| 780|Caenorhabditis elegans Hypothetical
protein W05H9.4 protein.
Length = 780
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 285 RYAPVIYEP*CNSVFSFPFFL 223
RY+P YE C SV S P+FL
Sbjct: 210 RYSPYDYEWLCGSVISGPYFL 230
>AC006748-1|AAF60514.2| 323|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 66 protein.
Length = 323
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 306 DTSSLFVRYAPVIYEP*CNSVFSFPFFLLLNMFKEALKPPNF 181
D S F Y IY C+S+F F L+ N LKP F
Sbjct: 2 DPSYYFFHYYWPIYFLLCSSLFLAMFILIYNFTTPILKPMRF 43
>AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 67 protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -2
Query: 291 FVRYAPVIYEP*CNSVFSFPFFLLLNMFKEALKPPNFSIIVTQDIPQKKASVAT*FTVLS 112
F Y PV + C+S+F FFL+ N LKP F + + ++A F + S
Sbjct: 8 FHYYWPVFFMS-CSSLFLIMFFLIHNFTTPLLKPLRFFLYPANAVMMISITMA--FVIQS 64
Query: 111 R 109
R
Sbjct: 65 R 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,247
Number of Sequences: 27780
Number of extensions: 292789
Number of successful extensions: 968
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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