Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22p08
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    27   0.22 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.39 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      26   0.39 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.4  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 277 RVSYEQRRRVWIRQHSVAHENIIP 348
           ++ ++ RR  W ++H +A  NI+P
Sbjct: 53  KIWFQNRRMKWKKEHKMASMNIVP 76


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 234 PFFLLLNMFKEALKPPNFSIIVTQDIPQKKA 142
           PF + +  ++   KP NF I +  D P K A
Sbjct: 485 PFLIKIRQYRLNHKPFNFHITINADKPMKAA 515


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 234 PFFLLLNMFKEALKPPNFSIIVTQDIPQKKA 142
           PF + +  ++   KP NF I +  D P K A
Sbjct: 485 PFLIKIRQYRLNHKPFNFHITINADKPMKAA 515


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 119 TVNYVATLAFFCGISCVTIMLKFGGFKASLNIF-NSRKNG 235
           T+NY+     + G     I++KF G  +SLN+  N   NG
Sbjct: 60  TMNYLLDTDQW-GDKTFVIIMKFNGVPSSLNVITNKTGNG 98


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 551 VLSLVVCAKDS--LCRDLRRPSGRLIRPL 471
           V  + +C++D   L RDL R   +LIRP+
Sbjct: 17  VFCVGLCSEDEERLVRDLFRGYNKLIRPV 45


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/38 (23%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 241 ENRITSGLIYDRRVSYEQRRRVWIRQHSVAHE-NIIPS 351
           +N+  SG+    R++ ++  R+W+  + ++ E ++ PS
Sbjct: 115 KNQNCSGITSVYRIAIDEWDRLWVLDNGISGETSVCPS 152


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 545 SLVVCAKDSLCRDLRRPSGRLIRPLCFDSELLSL 444
           +++VC    L R LRRP   L+  L      ++L
Sbjct: 59  NILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVAL 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,579
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)