Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22o24
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           89   5e-19
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    31   0.18 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   9.0  

>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 89.0 bits (211), Expect = 5e-19
 Identities = 49/119 (41%), Positives = 74/119 (62%), Gaps = 6/119 (5%)
 Frame = +2

Query: 290 KYIDIGANLTDDMYKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELS 469
           ++ DIG N TD +++G Y+   KH  D D ++ RA   G+ K+++TG ++E+S++A+ L+
Sbjct: 13  RFYDIGYNATDPVFRGIYHEKLKHPDDFDSIISRAKAVGVEKMMITGDNVENSEEALNLA 72

Query: 470 RTDSKLFT-TVGCHPTRCSEFL---SNPDDYLQGLRDLISGNK--DKVVAIGECGLDYE 628
            T+ + FT TVG HP +   FL     P+DYL  L  L +  K   KVVA GE GLDY+
Sbjct: 73  -TNYECFTSTVGVHPCQAQCFLRHSEGPEDYLVKLEALANKGKASGKVVAFGEFGLDYD 130


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 278 SALRKYIDIGANLTDDMYKGEYNGSRKHDPDLDVVLERAWT 400
           + L+ ++DI  +L D++   EY+ SR+   D +++ E  WT
Sbjct: 471 NVLKLFMDINPSLFDEV-DAEYSESRRKKEDEEIIREERWT 510


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 107 YIPYILVSNMINLMNNI*ETDKILQTHSVIHLNNFEH 217
           + PY ++S   +L+  + ETD  +   S+I L  F++
Sbjct: 194 HTPYEVLSKHADLITELDETDGKVYPQSIIRLEEFKN 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,683
Number of Sequences: 5004
Number of extensions: 45823
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)