Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22o24
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0409 + 3143838-3144017,3144345-3144461,3144659-3144739,314... 48 5e-06
07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315... 36 0.020
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 31 1.00
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 31 1.00
11_01_0131 + 1086916-1088127,1088213-1089469 29 4.0
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 28 5.3
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393... 28 5.3
12_01_0134 + 1017278-1018540,1018626-1019882 28 7.0
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436... 23 7.4
>07_01_0409 +
3143838-3144017,3144345-3144461,3144659-3144739,
3145335-3145405,3145479-3145589,3146194-3146382,
3146643-3146670
Length = 258
Score = 48.4 bits (110), Expect = 5e-06
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Frame = +2
Query: 422 VTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFL-----------SNPDDYLQGLRD 568
VTGGSL++S++A+E++ TD +L C C +++ +P + Q L
Sbjct: 61 VTGGSLKESREALEIAETDGEL----SCFDAACFDYVLLGAFKEFEESGDPKGHFQALLA 116
Query: 569 LISGN--KDKVVAIGECGLDYE 628
L K KVVA+GECGLDY+
Sbjct: 117 LAKEGIAKGKVVAVGECGLDYD 138
>07_01_0412 +
3151059-3151090,3151374-3151833,3151899-3151979,
3152682-3152752,3152827-3152937,3153149-3153231,
3153489-3153705,3154169-3154252,3154423-3154498
Length = 404
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 332 KGEYNGSRKHDPDLDVVLERAWTSGINKIIV 424
+G Y+G + H D+ VL RAW +G+++IIV
Sbjct: 11 EGIYHGKQCHAADIPAVLARAWAAGVDRIIV 41
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 536 NPDDYLQGLRDLISGN--KDKVVAIGECGLDYE 628
+P+ + Q L L K KVVA+GECGLDY+
Sbjct: 171 DPEGHFQALLALAKEGIAKGKVVAVGECGLDYD 203
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +2
Query: 371 LDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKL 487
L+++L W SG VTGGSL++S++A+E++ TD +L
Sbjct: 69 LNLLLSLVW-SGRK---VTGGSLKESREALEIAETDGEL 103
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 30.7 bits (66), Expect = 1.00
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +2
Query: 329 YKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCH 508
YKG GSR DPDL + R W + N++ +G ++D+K ++ D+K + C
Sbjct: 81 YKGNICGSRHGDPDLHELDVRYWMNP-NQVYQSG--VKDNK----INLADAKAICLMEC- 132
Query: 509 PTRCSEFLSNPDDYLQG 559
P ++ L+ DY +G
Sbjct: 133 PIPAADGLNFVCDYPEG 149
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 30.7 bits (66), Expect = 1.00
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +2
Query: 329 YKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCH 508
YKG GSR DPDL + R W + N++ +G ++D+K ++ D+K + C
Sbjct: 81 YKGNICGSRHGDPDLHELDVRYWMNP-NQVYQSG--VKDNK----INLADAKAICLMEC- 132
Query: 509 PTRCSEFLSNPDDYLQG 559
P ++ L+ DY +G
Sbjct: 133 PMPAADGLNFVCDYPEG 149
>11_01_0131 + 1086916-1088127,1088213-1089469
Length = 822
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 462 SIAFLLSSRLPPVTIILLMPLVQALSSTTSKSGSCFLDPLYSPLYISS 319
S F + LPP + L V ALS+ + G FL+ L P+++ S
Sbjct: 126 SFGFAVGCALPPFLVGALTGYV-ALSTDDKRKGDTFLNKLSFPIFLGS 172
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 468 LGQILSYSQLW-DVIQPGAVSFYPILMTTYKDCEISYQETRTKL 596
+G+ + +S L D+ + G SF +TTY DC S +T +L
Sbjct: 163 IGEGIQWSSLMSDLARCGGKSFRLTAITTYADCHASTHDTVVRL 206
>02_05_0023 +
25138709-25138823,25139013-25139197,25139268-25139335,
25139729-25140041,25140621-25140962,25140990-25141079
Length = 370
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 402 VASTKLLLLEGVLKTVKKQSSCLGQILSYS 491
V KL LL VL + ++C+GQI+SYS
Sbjct: 142 VTDLKLNLLGSVLSGLAIATTCVGQIVSYS 171
>12_01_0134 + 1017278-1018540,1018626-1019882
Length = 839
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 462 SIAFLLSSRLPPVTIILLMPLVQALSSTTSKSGSCFLDPLYSPLYISS 319
S F + LPP + L V ALS+ G FL+ L P+++ S
Sbjct: 143 SFGFAIGCTLPPFLVGALTGYV-ALSTDDKHKGDTFLNKLSFPIFLGS 189
>11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,
4369000-4369160,4369233-4369322,4369406-4369480,
4369569-4369640,4369719-4369891,4369964-4370078,
4370274-4370387,4370582-4370661,4370755-4370842,
4370941-4370997,4371111-4371176,4371254-4371349,
4371459-4371566,4371941-4372039,4372108-4372227,
4372399-4372437,4372940-4373026,4373276-4373347,
4373443-4373509,4374455-4374546,4374631-4374708,
4374785-4374922,4375029-4375164,4375306-4375468,
4375690-4375849,4375950-4376056,4376149-4376259,
4377850-4378159
Length = 1107
Score = 23.0 bits (47), Expect(2) = 7.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 432 GVLKTVKKQSSCLG 473
G++K KKQ +CLG
Sbjct: 1006 GIMKFAKKQLTCLG 1019
Score = 23.0 bits (47), Expect(2) = 7.4
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +3
Query: 486 YSQLWDVIQPGAVSFYPILMTTYKDCEISYQETRTK 593
+ +LW Q S + ++ T +DC I Y+ + +
Sbjct: 1057 FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRRKAQ 1092
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,573
Number of Sequences: 37544
Number of extensions: 257897
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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