Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22o24
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell death-re...    55   5e-08
AF036694-6|AAB88340.1|  286|Caenorhabditis elegans Cell-death-re...    55   5e-08
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    41   8e-04
U80836-6|AAB37894.2|  259|Caenorhabditis elegans Hypothetical pr...    39   0.003
AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical ...    31   0.51 
U56961-1|AAK39295.1|  118|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell
           death-related nuclease 2 protein.
          Length = 286

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
 Frame = +2

Query: 281 ALRKYIDIGANLTDDMYKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAI 460
           AL + +DIGANL          G   +  DL+ VL+RA  +G++KI+VTG S + S +  
Sbjct: 2   ALYELVDIGANL----------GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECA 51

Query: 461 EL-SRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDY 625
           +L  +    L+ T G HP    ++    D  L+ L+ L        VA+GECGLD+
Sbjct: 52  DLVEKYPGFLYFTAGVHPHDAKDW---NDGTLEALKKL--QENPSCVAVGECGLDF 102


>AF036694-6|AAB88340.1|  286|Caenorhabditis elegans
           Cell-death-related nuclease protein2 protein.
          Length = 286

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
 Frame = +2

Query: 281 ALRKYIDIGANLTDDMYKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAI 460
           AL + +DIGANL          G   +  DL+ VL+RA  +G++KI+VTG S + S +  
Sbjct: 2   ALYELVDIGANL----------GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECA 51

Query: 461 EL-SRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDY 625
           +L  +    L+ T G HP    ++    D  L+ L+ L        VA+GECGLD+
Sbjct: 52  DLVEKYPGFLYFTAGVHPHDAKDW---NDGTLEALKKL--QENPSCVAVGECGLDF 102


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 428 GGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKD-KVVAI 604
           GG+  D    I    ++  L TT GCHP    E+ S  D + Q L  ++S     KV+A+
Sbjct: 238 GGNGYDIDWIINEIESNIYLGTTWGCHPHYAQEWASK-DIFWQTLEHILSNAATWKVLAV 296

Query: 605 GECGLD 622
           GECGLD
Sbjct: 297 GECGLD 302


>U80836-6|AAB37894.2|  259|Caenorhabditis elegans Hypothetical
           protein B0432.8 protein.
          Length = 259

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +2

Query: 356 KHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRT-DSKLFTTVGCHPTRCSEFL 532
           K   DLD V+  A  +GI K+I         +K+I +S+     ++T +G HP +     
Sbjct: 12  KFKEDLDDVIGHAHATGIQKMINFPEFESQFEKSIGISKKWPGSVYTGIGIHPIQ-KRGK 70

Query: 533 SNPDDYLQGLRDLISGNKDKVVAIGECGLDY 625
           S    ++  +      ++  ++ +GECGLD+
Sbjct: 71  SAKMKHISKMEQFFVEHERDIICVGECGLDH 101


>AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical
           protein Y24F12A.1 protein.
          Length = 437

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 422 VTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKD-KVV 598
           V G S  D +  ++   +   L TT GCHP   ++       +   +  ++S  ++ KV+
Sbjct: 197 VKGNSSYDVEWIVKELASPLYLGTTWGCHP-HFAQHWGRMGVFWTTMEYILSDAEEWKVL 255

Query: 599 AIGECGLD 622
           A+GECG+D
Sbjct: 256 AVGECGID 263


>U56961-1|AAK39295.1|  118|Caenorhabditis elegans Hypothetical
           protein T19D7.3 protein.
          Length = 118

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 468 DSSIAFLLSSRLPPVTIILLMPLVQALSSTTSKSGSCFLDPLYSPL 331
           D+++A  L + LP + ++  MP+V  L  +   +GSC   P  SPL
Sbjct: 71  DNTLAKKLKNPLPSMNLVDGMPVVPGLLGSLPGAGSCL--PRGSPL 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,978,499
Number of Sequences: 27780
Number of extensions: 245299
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)