Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22o16
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    36   0.002
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    29   0.21 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   1.1  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.6  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   3.4  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   3.4  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    25   4.5  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   4.5  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   4.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   4.5  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   4.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.9  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   5.9  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    25   5.9  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    24   7.8  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    24   7.8  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -2

Query: 331  FHKLFLSGTVYFSICFNYFPVAYPRLPNSLFSVLSICTYENIRCKINGCGRFSFAAEFCD 152
            F  L++   ++    F   P+AY  + NS+F +LSIC   NI  K+ G   + F   F +
Sbjct: 1274 FTGLYIVHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWN 1333

Query: 151  RHNI 140
              ++
Sbjct: 1334 MFDV 1337


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 133  DGLCCVCHKTPLQTRIYHSHLFCTE--CFHKYIWTAPKRDCSGDVDK 267
            + +CC+CHKTP+   I    + C    CF+    T   R  +G+ +K
Sbjct: 1916 ESVCCMCHKTPILPAIC---MLCGSVICFNARQNTVSSRRLTGECNK 1959


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 374 HMKFYLSPHKRIATFSQIVFKWNSLLLDLLQLFPCGLSTSPEQSL 240
           HM  Y    + I+T +   +KW+  L   LQ+F  GL+   E ++
Sbjct: 139 HMNIYFDWDREISTCNPDYYKWSQYL--FLQMFHKGLAYQAEATV 181


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 121 YKTHDGLCCVCHKTPLQTRIYHSHLFCTECF 213
           +K    +C +C K   Q R + S  FC  C+
Sbjct: 92  HKCESNVCSMCSK---QERTFESEAFCPSCY 119


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = +2

Query: 227 GQHRKE----TVRETWISHREIIEANREVNCST*KQFVKKLQFSCVGLNKISCVIS 382
           GQ+ K+    T +  W  H E+   N   +C + K      + SC    K SC  S
Sbjct: 195 GQNTKQICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSS 250


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 83  KMKSTESITTRSAIKPTTAYVVSVTKLRCKRESTTAIYFAPNVFISTYGQH--RKETVRE 256
           K    + +T    +KP+   ++S  + R KR +    +   N +IST   H  RKE + E
Sbjct: 65  KRNDPKGLTYYQLLKPSEVEILSRPETRRKRMACQVFFL--NYYISTIEYHKLRKERLEE 122


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 88  EIDGKYYDAISYKTHDGLCCVCHKTPLQTRIYHSHLFCTECFHKYIWTAPK 240
           E+D KY+D          C VCH    +    +S L  TEC   Y+ T P+
Sbjct: 123 ELDTKYFDIFH-------CRVCHTCREKYPDKYSLLTKTECKLDYLLTEPE 166


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = +1

Query: 94  DGKYYDAISYKTHDGLCCVCH--KTPLQTRIYHSHLFCTECFHKYIWTAPKRDCSGDVD 264
           +G     +   T+ G C  C   K  L+     +   C +C++ Y W+    D + + D
Sbjct: 542 NGLISSTVDNDTYFGQCFACAVVKRTLERNNITASPECQQCYYNYCWSGLYDDSAANDD 600


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 40  EDTTTQQKNKTTIVKDEIDGK 102
           +DTT+++K + T  K E DGK
Sbjct: 37  KDTTSEEKKEETTEKKEDDGK 57


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 335  TFSQIVFKWNSLLLDLLQLFPCGLSTSPE 249
            TF++I  KWN+ L+ L+  +     ++PE
Sbjct: 1279 TFTKIANKWNTALIALMTYYREAAISTPE 1307


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 139 LCCVCHKTPLQTRIYHSHLFCTECFHKYIW 228
           L C   +  L+ R   +   C +CF +Y W
Sbjct: 566 LACAVVQRSLERRNQSTSAACQQCFSQYCW 595


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 100 KYYDAISYKTHDGLCCVCHKTPLQT 174
           KY D  S   HD L  + H  P++T
Sbjct: 881 KYIDYFSSHPHDSLINILHLYPIET 905


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 239 KETVRETWISHREIIEANREVNC 307
           KETV E W +  E+++ +  ++C
Sbjct: 528 KETVEEKWENVMELVQQSDNISC 550


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 144 LCLSQNSAANENLPQPFILHRMFS 215
           L LSQ     +NLP  +ILH  FS
Sbjct: 99  LSLSQKEKLFQNLPTVYILHGGFS 122


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = -1

Query: 359 LSPHKRIATFSQIVFKWNSLLLDLLQLFPCGLSTSPEQSLFGAVHMY 219
           L+ +KRI T  Q+  +W++L  D   + P  + +  ++++ G+ ++Y
Sbjct: 806 LNINKRIITAHQVDVEWSTLQRDFTDVDP--VRSLMKKTMHGSTNIY 850


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 296 EVNCST*KQFVKKLQFSCVGLNKIS 370
           E    T K FV   + SCVGL+++S
Sbjct: 132 ETTMKTLKGFVDSGKISCVGLSEVS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,589
Number of Sequences: 5004
Number of extensions: 36819
Number of successful extensions: 119
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)