Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22o16
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006712-2|AAK39324.1| 754|Caenorhabditis elegans Hypothetical ... 31 0.31
Z70312-6|CAA94387.1| 807|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z70309-14|CAA94363.1| 807|Caenorhabditis elegans Hypothetical p... 29 1.3
AF125954-5|AAD14708.2| 338|Caenorhabditis elegans Seven tm rece... 29 1.3
AF016683-10|AAB66198.1| 405|Caenorhabditis elegans Hypothetical... 28 2.2
U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical pr... 27 5.1
U49955-1|AAA93430.1| 481|Caenorhabditis elegans Hypothetical pr... 27 5.1
U40421-3|AAA81439.2| 347|Caenorhabditis elegans Hypothetical pr... 26 9.0
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 26 9.0
AC006817-1|ABA00162.1| 163|Caenorhabditis elegans Hypothetical ... 26 9.0
>AC006712-2|AAK39324.1| 754|Caenorhabditis elegans Hypothetical
protein Y119C1B.5 protein.
Length = 754
Score = 31.1 bits (67), Expect = 0.31
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +1
Query: 19 INIHLEMEDTTTQQKNKTTIVKDEIDGKYYDAISYKTHDGLCCVCH-KTPLQTRIYH-SH 192
+NI+ +E T + KN+ VK+ D + + + +C +C + + RI H
Sbjct: 563 VNIYKRLEHTVSFIKNRNAAVKNINRLSKADVVQLREREDVCAICFIEMKEEARITPCKH 622
Query: 193 LFCTECFHKYIWTAPKRDC 249
F C K W A K C
Sbjct: 623 YFHGPCLRK--WLAVKMVC 639
>Z70312-6|CAA94387.1| 807|Caenorhabditis elegans Hypothetical
protein ZC168.1 protein.
Length = 807
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 7 LKFTINIHLEMEDTTTQQKNKTTIVKDEIDG 99
LK + +H E ED T +Q + T VKD I G
Sbjct: 475 LKKPLQVHYETEDVTAKQGDDYTAVKDGILG 505
>Z70309-14|CAA94363.1| 807|Caenorhabditis elegans Hypothetical
protein ZC168.1 protein.
Length = 807
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 7 LKFTINIHLEMEDTTTQQKNKTTIVKDEIDG 99
LK + +H E ED T +Q + T VKD I G
Sbjct: 475 LKKPLQVHYETEDVTAKQGDDYTAVKDGILG 505
>AF125954-5|AAD14708.2| 338|Caenorhabditis elegans Seven tm
receptor protein 120 protein.
Length = 338
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 182 TTAIYFAPNVFISTYGQHRKETVRETWISHREIIE 286
+T IYF+ N+F + Y + ++ W HR++ +
Sbjct: 216 STIIYFSLNIFRTVYRHTKHRKSKKNWEIHRQLFQ 250
>AF016683-10|AAB66198.1| 405|Caenorhabditis elegans Hypothetical
protein K09F6.8 protein.
Length = 405
Score = 28.3 bits (60), Expect = 2.2
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 152 VTKLRCKRESTTAIYFAPNVFIS-TYGQHRKETVRETWISHREIIEANREVNCST*KQF- 325
+ LR T I + +I T G+H ET+R T H + ++ +V K
Sbjct: 152 INTLRFYAPRGTVIQIPISFYIRLTVGKHHSETLRYTLKLH-DALKYLLQVVLGDRKNIR 210
Query: 326 VKKLQFSCVGLNKI 367
++KLQ SC G+ +I
Sbjct: 211 IRKLQLSCAGILRI 224
>U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical
protein T12E12.1 protein.
Length = 482
Score = 27.1 bits (57), Expect = 5.1
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +1
Query: 13 FTINIHLEMEDTTTQQKNKTTIVKDEIDGKYYDAISYKTHDGLCCVCHKTPLQTRIYHSH 192
F + + T+ + K + K D + + IS T D C CH ++ +H
Sbjct: 246 FCVKCGADYHAPTSCETIKQWMTKCADDSETANYISAHTKD--CPQCHSC-IEKAGGCNH 302
Query: 193 LFCTECFHKYIW 228
+ CT C H + W
Sbjct: 303 IQCTRCRHHFCW 314
>U49955-1|AAA93430.1| 481|Caenorhabditis elegans Hypothetical
protein C27D9.1 protein.
Length = 481
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 46 TTTQQKNKTTIVKDEIDGKYYDAISYKTHDGLCCVC 153
T+ Q+ I+ +DG +Y SYK D LC C
Sbjct: 152 TSPDQRIHECILYSLLDGNWYSLNSYKGADELCNGC 187
>U40421-3|AAA81439.2| 347|Caenorhabditis elegans Hypothetical
protein C02B8.6 protein.
Length = 347
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 139 LCCVCHKTPLQ-TRIYHSHLFCTEC 210
+C +CH TP + R+ +H FC C
Sbjct: 4 ICTICHNTPNRPVRLDCNHEFCYIC 28
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 335 TFSQIVFKWNSLLLDLLQLF 276
TF++IV KWN+ L+ L+ F
Sbjct: 1247 TFTKIVNKWNTALIGLMTYF 1266
>AC006817-1|ABA00162.1| 163|Caenorhabditis elegans Hypothetical
protein Y72A10A.1 protein.
Length = 163
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 292 ICFNYFPVAYPRLPNSLFSVLS 227
+C PV YP LP+SLFS ++
Sbjct: 75 VCLVDKPVDYPFLPDSLFSYMA 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,775,799
Number of Sequences: 27780
Number of extensions: 209548
Number of successful extensions: 620
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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