Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22o12
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 125 7e-30
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 92 8e-20
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 30 0.36
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.62
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 28 1.1
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 27 1.9
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 27 1.9
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.8
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 26 5.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.7
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 25 7.7
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce... 25 7.7
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 125 bits (301), Expect = 7e-30
Identities = 61/148 (41%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
Frame = +3
Query: 219 SIVWVLGGPGSGKGTQCDKIVAKYG-FTHLSTGDLLRAEV-KSGSERAKCLTAIMERGEL 392
++++VLGGPG+GKGTQCD++ K+ F H+S GD LR E + GS+ + ++ G++
Sbjct: 3 NVIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKI 62
Query: 393 VPNEIVLDLLKEAILARAEES-KGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETL 569
VP EI + LL+ + ++ FLIDG+PRE Q FE+++ P +YF ET+
Sbjct: 63 VPMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETM 122
Query: 570 TQRLLGRAASSGRADDNEETIKLRLKTF 653
+RL+ R +SGR+DDN E+IK R T+
Sbjct: 123 LKRLIHRGKTSGRSDDNIESIKKRFVTY 150
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 91.9 bits (218), Expect = 8e-20
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 231 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIV 410
++G PG+GKGTQ I KYG HL+TGD+LR++V +E K IM++G LV ++IV
Sbjct: 8 LVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIV 67
Query: 411 LDLLKEAILARAEESKGFLIDGYPREKSQG----IAFEENIAPVSVIIYFEASSETLTQR 578
++K+ IL E GF++DG+PR Q +E ++ ++ + E L +R
Sbjct: 68 TGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRR 127
Query: 579 LLGRAASSG 605
+ GR G
Sbjct: 128 ITGRLVHPG 136
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 210 SKKSIVWVLGGPGSGKGTQCDKIVAKYGFT 299
SK I+ +LG GSGK TQ + +A+ G+T
Sbjct: 524 SKNQILVLLGETGSGKTTQITQYLAEEGYT 553
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 29.1 bits (62), Expect = 0.62
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 198 PIDTSKKSIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDL 320
P + K + V+G GSGK T + K GF ++ DL
Sbjct: 8 PTNQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 204 DTSKKSIVWVLGGPGSGKGTQCDKIVAK 287
D+ K +I+ + GGP SGK C++++ +
Sbjct: 4 DSVKSAIIGIAGGPFSGKTQLCEQLLER 31
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 123 KEPIVDKLPPCPLMCKSPKCKAYMAPIDTSKKSIVWVLGGPGSGKGTQCDKIVAKY 290
++ + D+L C L+ PK A+ + S++ ++G GSGK T C K+ Y
Sbjct: 76 QKAVFDEL--CSLV--DPKVDAFTPK--KGRPSVIMMVGLQGSGKTTTCSKLALHY 125
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 213 KKSIVWVLGGPGSGKGTQCDKIVAK 287
++ ++ + GGPGSGK T C I+AK
Sbjct: 28 QRVLIGLAGGPGSGKSTLC-AILAK 51
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 198 PIDTSKKSIVWVLGGPGSGKGTQCDKIVAKY 290
P + IV V+G PG+GK T +V +Y
Sbjct: 68 PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRY 98
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.8
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 HNATRSSPNTGSLTSRLETCSGLKSKAARRGRNALPLLWKE--ASLSLMKSSWIC*KKRS 435
++ T +SP + SLTS T S L S + A + AS S+ SS S
Sbjct: 97 NSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTS 156
Query: 436 WPALKNPKASSSTATLARSHRVSLLKRTS 522
+ S+++AT S S L T+
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTA 185
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 313 ETCSGLKSKAARRGRNALPLLWKEASL 393
+ CS + S R GR +P+L K SL
Sbjct: 19 DCCSAVASALLRHGRLTIPMLQKRTSL 45
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 498 GIAFEENIAPVSVIIYFEASSETLTQRLLGRAASSGRADDNEETIK 635
GI+F+ A V+ YF+ S T T +LGR A + + D ++
Sbjct: 2561 GISFDSTKAVAPVLTYFDFCSLT-TGNILGRIALAFTSIDENANLE 2605
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 258 GTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEI--VLDLLKEA 431
G +KI++ + + S K R++C ++ GEL+PN + + D L+
Sbjct: 589 GVVLEKIISAVTYDNTSASYGFSDVQKINEMRSRCCFELVRLGELMPNPLMNIFDQLQSI 648
Query: 432 I 434
I
Sbjct: 649 I 649
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 140 INNRLFT-RFTQFLFHCIIQKCICLFF 63
+N L+ + LF CII++C+ +FF
Sbjct: 230 VNGELYNDESAKELFRCIIKECVDIFF 256
>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 426 EAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 581
EA + E + GF+ + P + G+ EEN P + IYF + T T R+
Sbjct: 35 EATIPNLEVAFGFIDEVTP--VAYGVFIEENDQPAGMAIYF-LNFSTWTSRV 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,110
Number of Sequences: 5004
Number of extensions: 53928
Number of successful extensions: 194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -