Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22o08
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)                       28   5.2  
SB_21397| Best HMM Match : Tropomodulin (HMM E-Value=0)                28   6.9  
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 27   9.1  

>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 215 NSITNSQTITAVTWHSSS 162
           +S++ S TITA+ WH SS
Sbjct: 288 HSVSQSDTITAIAWHPSS 305


>SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)
          Length = 442

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -2

Query: 282 GRSGIREGQWFDATTSRFGAGY*FDN 205
           GR  IRE  WF+ATTS    GY  DN
Sbjct: 340 GRRSIRECDWFNATTSN-STGY-IDN 363


>SB_21397| Best HMM Match : Tropomodulin (HMM E-Value=0)
          Length = 373

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 293 SRREGDQVFVKGNGLMQPLPGLVQG 219
           + RE    F+KG+GL +  PG+V+G
Sbjct: 145 AEREASDRFLKGSGLKKYTPGIVKG 169


>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 593 MRPLCWMPQHFLYMFSVQDQQMCKHC 516
           +RP+ W+ Q+F +   +Q  Q   HC
Sbjct: 248 IRPIYWLVQYFFFKTPIQGAQTTIHC 273


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 220  PCTK-PGSGCIK-PLPFTNT*SPSLRLTPTPVGQNI 321
            PC +   SG ++  LP  +T SP+L +TP PV  NI
Sbjct: 974  PCQRLTNSGLVEMKLPIQST-SPNLGMTPQPVADNI 1008


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 451 YLETLTKQVKDGSSYGEKNSIQQCLHICWSCTENI 555
           Y E +TK V  G S    +S    +++ WSC   I
Sbjct: 14  YHECMTKPVAKGGSEEPPHSTGSLVNVAWSCVRRI 48


>SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 339 HHKLDLTLV*FIYNKTLFSNLRLKTF 416
           H+KL L +V FIY K+L  N RL  F
Sbjct: 95  HYKLALNIVLFIYPKSLPLNSRLCVF 120


>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 203 NSQTITAVTWHSSSWMQDQQ*NHSTNEH 120
           NS  IT +TW S SW+Q     HST  +
Sbjct: 26  NSPDITKITWISHSWLQYSP-PHSTQTY 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,365,401
Number of Sequences: 59808
Number of extensions: 371603
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)