Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22o07
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 26 2.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 2.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 2.8
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 2.8
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 2.8
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 24 6.5
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 24 8.6
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 24 8.6
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 24 8.6
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 24 8.6
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 2.1
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 219 KKMLKTFTPSRPVLELANRSLRNVRTTQKQTLHKKYTNNNKYI 347
K+ LK FT + + AN++++ +T QK TL + NN K I
Sbjct: 191 KEKLKPFTKTMQIH--ANKTVQLSQTIQKATLLLQRLNNTKNI 231
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 258 LELANRSLRNVRTTQ--KQTLHKKYTNNNKY 344
+E+ANR + +RTT+ K HK+ ++++K+
Sbjct: 527 MEMANRVISEIRTTKIYKAQQHKQKSSHHKH 557
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 2.8
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +3
Query: 213 GMKKMLKTFTPSRPVLELANRSLRNVRTTQKQTLHKKYTNNN 338
G ++ L+T TP+ ++ ++ LR ++ + + +TN N
Sbjct: 1397 GNRRALRTRTPTNEDIQRSDSKLREDQSRDRTPQSRSFTNEN 1438
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 2.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 304 FCVVRTLRSDRLASSSTGRDGVNVFNIFFIPLYLCLTKFHDMMKGSF 164
FCV +L+ D + ++ DGV + ++ I K HDM +F
Sbjct: 595 FCVDISLQDDIVRNNHCFTDGVGMASLSVIRRLSLEVKNHDMFPSAF 641
>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 25.4 bits (53), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 364 FYIEEFMYLLLFVYFLCSVCFCVV 293
+Y E F + LLFVYF ++ +V
Sbjct: 51 YYFEGFSHSLLFVYFFLTLIILLV 74
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 24.2 bits (50), Expect = 6.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -2
Query: 345 CIYYYSCIFYVAFVFVLFV 289
C + Y+CIF++ VF +
Sbjct: 343 CFWVYACIFFLTRVFCFLI 361
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 254 RPRWRERFQHFLHSSVFVLDEV 189
RP+ RER + SVFV DEV
Sbjct: 39 RPQDRERERLIRSGSVFVFDEV 60
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 252 PVLELANRSLRNVRTTQKQTLHKKYTN 332
PVL L R T +++ HKKY +
Sbjct: 594 PVLRLRTRDSNPSNTDSRESNHKKYNH 620
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 23.8 bits (49), Expect = 8.6
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = -1
Query: 337 LLFVYFLCSVCFCVVRTLRSDRLASSSTGRDGVNVFNIFFIPLYLCLTKFHDMMKGSF 164
L F Y + C + + LA+ S ++ F I + CL+++H K F
Sbjct: 164 LNFNYSFLAATLCTLMVALDNHLATISRFILLDSMLLFFIISTFFCLSRYHVYHKAPF 221
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 349 FMYLLLFVYFLCSVCFCVVRTLRSDRLASS-STGRDG 242
F+Y L+F Y S+ V+ + + RL ++ S+G G
Sbjct: 279 FIYRLIFFYIFGSLTIGVITSSKDPRLLNAISSGASG 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,120
Number of Sequences: 5004
Number of extensions: 32111
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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