Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22o03
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 123 3e-29
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 60 2e-10
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 30 0.37
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 27 2.6
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 2.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 4.5
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 7.9
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 25 7.9
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 123 bits (296), Expect = 3e-29
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
Frame = +2
Query: 56 RNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFI 235
R +V+V+GA IG +S+ LK N KVS+L L+D G ++ ++ +V +
Sbjct: 27 RAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINTTSNVVGYA 85
Query: 236 -GDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAIS 412
D LE+A++ +++V++ + +PRKPG TR+ + NA +++ L A EA +
Sbjct: 86 PDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKYLVV 145
Query: 413 TNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGH 592
TNP+N +P + + G + P +FG+T +D+ R+ F ++ A+ + +PV+GGH
Sbjct: 146 TNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGH 205
Query: 593 SDKTIIPLFS 622
S TI+PL S
Sbjct: 206 SGATIVPLLS 215
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 60.5 bits (140), Expect = 2e-10
Identities = 39/187 (20%), Positives = 93/187 (49%), Gaps = 3/187 (1%)
Frame = +2
Query: 56 RNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYD-DDDRIKGTELELSNL-PGGPSVSA 229
+++++ ++GA + +GS + L + +++ + D + + +G ++L++ P
Sbjct: 19 KSIKIVIVGAGN-VGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNHAAPLSHETRV 77
Query: 230 FIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAI 409
++GD + + VV+ + +KPG TR +L AN + + + + + ++A + +
Sbjct: 78 YLGDY---KDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLV 134
Query: 410 STNPINYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIG 586
+TNP++ L + K + ++ G T IDT+R + + K ++ Q + +IG
Sbjct: 135 ATNPVDVL----TYATLKLTGFPAERVIGSGTIIDTARFQYLIGKLYGLDPQSVNADIIG 190
Query: 587 GHSDKTI 607
H D +
Sbjct: 191 EHGDSEL 197
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 29.9 bits (64), Expect = 0.37
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 320 REQMLGANAPLIQ-RLCKAIAAQNQEAFVAISTNPINYLIPFASTVMYKYGCYNPSKMFG 496
RE ++G N ++ +L + + + E +++NP+N I A TV+Y N S + G
Sbjct: 860 RESIIGLNPRTLEAKLLLYLKSLDVEIDALVASNPLNIRIMAAETVVYIIDKLNQSVLEG 919
Query: 497 ITHI 508
T +
Sbjct: 920 KTSV 923
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/81 (23%), Positives = 40/81 (49%)
Frame = +2
Query: 26 LKKNTLILQKRNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNL 205
+KK +++ KR+ +++ + A S GS+ L +S +S L +D + G + +
Sbjct: 216 IKKPSMVDHKRDSEINAVTAVSADGSFSPLTETLSSTISTL----SNDSLDGLSSQKNEF 271
Query: 206 PGGPSVSAFIGDTNLEQAIHS 268
G S S +I + ++ +S
Sbjct: 272 TGFNSNSEWIPNDTVDYICNS 292
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 482 SKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKTIIPLFSNLTPR 637
S + I TSR + +L+ + G SD + PLFSNL+PR
Sbjct: 384 SLISNINQPSTSRIDTSFMLSLQHEIKNSHSEASDGTSDVHLTPLFSNLSPR 435
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 667 ISLAWFNTIISRS*IRKQRYDSLVRMTSYYRYLYLLC 557
I L W + +S + I K L+ ++YR L LLC
Sbjct: 3799 IDLIWLASKVSEAGIGKLDIGLLMEKPTFYRILQLLC 3835
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 571 STGNRRSF*QDYHTAVFEFNSSKLSY*TMPS*YVNETGEEK 693
ST R SF + H++ + + L++ T +VNE EE+
Sbjct: 29 STYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENAEER 69
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 122 KRNSKVSKLHLYDDDDRIKGTELELSNLPGG 214
+RN++ S HL+ D ++ LE+ +LP G
Sbjct: 129 ERNARYSTSHLFLPSDFLQVNNLEIIHLPPG 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,413
Number of Sequences: 5004
Number of extensions: 57563
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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