Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22o03
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   145   3e-35
Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical pr...    43   2e-04
U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate dehydro...    43   2e-04
L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate dehyd...    43   2e-04
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    31   0.80 
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  145 bits (351), Expect = 3e-35
 Identities = 72/190 (37%), Positives = 119/190 (62%)
 Frame = +2

Query: 65  QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 244
           +V+++GAA  IG  + L LK++  V+ L LYD  +   G   +LS++     V+A  G  
Sbjct: 30  KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNT-PGVAADLSHIDSNAKVTAHTGPK 88

Query: 245 NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 424
            L  A+ +++++V+ + +PRKPG TR+ +   NA +++ L   IA  + +A +AI TNP+
Sbjct: 89  ELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPV 148

Query: 425 NYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKT 604
           N  +P AS V+ K G Y+P ++FG+T +D  RS++FV++    +A +  VPV+GGH+  T
Sbjct: 149 NSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGIT 208

Query: 605 IIPLFSNLTP 634
           IIPL S + P
Sbjct: 209 IIPLLSQVKP 218


>Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical
           protein F13D12.2 protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 2/183 (1%)
 Frame = +2

Query: 65  QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 241
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 242 TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 421
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 422 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 598
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 599 KTI 607
            ++
Sbjct: 196 SSV 198


>U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate
           dehydrogenase protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 2/183 (1%)
 Frame = +2

Query: 65  QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 241
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 242 TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 421
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 422 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 598
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 599 KTI 607
            ++
Sbjct: 196 SSV 198


>L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate
           dehydrogenase protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 2/183 (1%)
 Frame = +2

Query: 65  QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 241
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 242 TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 421
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 422 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 598
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 599 KTI 607
            ++
Sbjct: 196 SSV 198


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = -2

Query: 589 TSYYRYLYLLC--VNFQRFSNK*STS*RVYMRDSKHFGRIVTPVFIHYSTCKRYQIIYGV 416
           T++Y  LYLLC  V F  FS       +V +   +H   +   V++ YS    Y I +  
Sbjct: 468 TAFYDILYLLCFLVFFTDFSRLSRYENQVLLASKQHMCHVWEKVWVFYSRNPSYYIDH-F 526

Query: 415 GRYSYKRFLILS---CNGFAKSLNQWCISPE 332
            RY    F I S   C    K    + I+ E
Sbjct: 527 YRYLPTEFTIFSLGKCFSICKKQQNYLINTE 557


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +2

Query: 443  ASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINA 559
            A  V Y +GCY PS    +T IDT+ S S VA  + INA
Sbjct: 2031 AGRVNYIFGCYGPS----VT-IDTACSSSLVALEMAINA 2064


>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -3

Query: 699 CRLF-LTSLVNISAWHGSIR*FRGVKFENSGMIVLSE*PPITGTCISCALIFNALATNDR 523
           CR F L+SL+ I ++  +   F  V F  +  ++     P  G C+ CA+IF  L+ + +
Sbjct: 334 CRAFTLSSLMGIISFLPASNIFFTVGFSIAERVLYL---PSAGFCLLCAIIFKKLSVHFK 390

Query: 522 LLDV-SICVI 496
             DV SI +I
Sbjct: 391 NADVLSITLI 400


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 59  NVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRI 175
           NV V V+G+A+ + SY  L   +   +  +H+ DDD+ +
Sbjct: 428 NVTVIVLGSANLLISYFFLPESKGVNLDDVHVNDDDENV 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,944
Number of Sequences: 27780
Number of extensions: 319422
Number of successful extensions: 807
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)