Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22o02
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 30 0.40
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 2.2
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 2.2
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 27 2.9
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 3.8
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 26 5.0
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 26 6.6
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 25 8.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.7
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.7
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 29.9 bits (64), Expect = 0.40
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +1
Query: 466 NESDAKRNFSERVRNDIMRVLRE 534
N++DA++N +R+RND+++ L E
Sbjct: 72 NDNDARKNLRKRLRNDVLKDLAE 94
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 589 RITDTTFWRNEVSIEMERLVATCEKLSDTRRQLERAIAGIEGPL-HIVQECLYH 747
+ITD + ++ +E+ERL A E+ + Q E+ +E + ECL H
Sbjct: 147 QITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRNECLKH 200
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 258 RN*SYPNAIAAYNKHHGGPV--LHASRHGGRAAPVPEPSDRLRPQPRAR 398
R S NA + NK + P+ S G AAP P PS+ P R
Sbjct: 141 RRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTPSPSNSKSPPSENR 189
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 475 DAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGRRIGER 591
+ +++ E DI ++ RE +E+G + S R GER
Sbjct: 62 EKQKSIRETYEKDINKLKRELEELGVEANTASYRNRGER 100
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 655 CEKLSDTRRQLERAIAGIEGPLHIVQECLY 744
C++ SD R L +A++G+ +VQ CL+
Sbjct: 306 CKQWSDKARSLMQALSGLPWFSFVVQHCLH 335
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 530 GKPTKLVPKDKGTPGGELAKE*QTLRFGGTRSLSRWNAWLRPAKS*ATPA 679
G P K P+ TP + +R GG+R +S N W + + S P+
Sbjct: 206 GTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASLGFPS 255
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 267 SYPNAIAAYNKHHGGPVLHASRHGGRAAPVPEPSDRLRP 383
S P AY+ GGP++H S + P+ S RP
Sbjct: 243 STPTGSTAYSLSSGGPIVHPSINALLLTPICPNSLSFRP 281
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = +2
Query: 113 WLRKRQCARNFNNGVQ*RRQQEV------PVSRHKWAIVSIHQKNTL 235
W+RK C NF+ + + QEV P++R K I IH TL
Sbjct: 415 WVRKLDCCSNFSTDHENKSLQEVDFDASKPITR-KSLIPRIHNHQTL 460
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 716 GPSMPAMARSSCRRVSLSFSQVATKRSISIETS 618
G S P +A RR+ LS +VA + + ETS
Sbjct: 11 GNSHPELAEKVARRIGLSLGKVAVVQYSNRETS 43
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -1
Query: 312 VHHGVCYR---LRWHWGNFNFFIAHYRSPR 232
V HGVCYR +R + G + F+ Y S R
Sbjct: 3340 VGHGVCYRRLSIRSNGGTIHPFVIQYPSAR 3369
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 633 LDRDLVPPKRSVCYSFANS 577
LD D PPKRS+ + NS
Sbjct: 75 LDPDAYPPKRSIAFVLLNS 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,481
Number of Sequences: 5004
Number of extensions: 72196
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -