Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22o02
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched relat... 35 0.054
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 31 0.66
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 31 0.66
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 30 1.5
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 30 1.5
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 30 1.5
AF125463-3|AAD12860.1| 163|Caenorhabditis elegans Hypothetical ... 30 1.5
Z69386-3|CAA93432.2| 322|Caenorhabditis elegans Hypothetical pr... 30 2.0
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 2.7
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 2.7
U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine rece... 29 3.5
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 29 4.7
Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical p... 28 6.2
Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical p... 28 6.2
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ... 28 6.2
>AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched related
family protein12, isoform a protein.
Length = 901
Score = 35.1 bits (77), Expect = 0.054
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = -2
Query: 689 SSCRRVSLSFSQVATKRSISIETSFLQNVVSVILSPILRPESLCPWVPISSVSLNTRIMS 510
SSC S+ V KR + TSFL+N +S+I + + + W+ VS+ +
Sbjct: 477 SSCTSSSVESFDVIVKRRV---TSFLENYISLITNAFFQIFVVLVWIAFLVVSIYGITIM 533
Query: 509 FLTLSEKFLFASDS 468
+ LS + LF DS
Sbjct: 534 NINLSPRKLFMEDS 547
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 31.5 bits (68), Expect = 0.66
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 397 AARAALYTRYTQY------EWNQNTIKNYNESDAKRNFSERVRNDIMRVLRETDEIG--T 552
AA+ A Y ++ + EW + T +E DA + + ++ D+ + DE+
Sbjct: 1449 AAQVAFYEKHRRQFESIIAEWKKKTDDLSSELDAAQRDNRQLSTDLFKAKTANDELAEYL 1508
Query: 553 QGQRDSGRRIGERITDTTFWRNEVSIEMERLVATCEKLSDTRRQLERAIAGIEGPL 720
R + + + + D T E + L KL + +L++A+ E L
Sbjct: 1509 DSTRRENKSLAQEVKDLTDQLGEGGRSVAELQKIVRKLEVEKEELQKALDEAEAAL 1564
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/97 (25%), Positives = 47/97 (48%)
Frame = +1
Query: 445 QNTIKNYNESDAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGRRIGERITDTTFWRNEV 624
Q+ + N +E+ AK N ++ + + R L E Q + D + E+I RN++
Sbjct: 992 QDEMANQDEAVAKLNKEKKHQEESNRKLNED----LQSEEDKVNHL-EKI------RNKL 1040
Query: 625 SIEMERLVATCEKLSDTRRQLERAIAGIEGPLHIVQE 735
+M+ L ++ +R +E+A +EG L + QE
Sbjct: 1041 EQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQE 1077
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 31.5 bits (68), Expect = 0.66
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 397 AARAALYTRYTQY------EWNQNTIKNYNESDAKRNFSERVRNDIMRVLRETDEIG--T 552
AA+ A Y ++ + EW + T +E DA + + ++ D+ + DE+
Sbjct: 1449 AAQVAFYEKHRRQFESIIAEWKKKTDDLSSELDAAQRDNRQLSTDLFKAKTANDELAEYL 1508
Query: 553 QGQRDSGRRIGERITDTTFWRNEVSIEMERLVATCEKLSDTRRQLERAIAGIEGPL 720
R + + + + D T E + L KL + +L++A+ E L
Sbjct: 1509 DSTRRENKSLAQEVKDLTDQLGEGGRSVAELQKIVRKLEVEKEELQKALDEAEAAL 1564
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/97 (25%), Positives = 47/97 (48%)
Frame = +1
Query: 445 QNTIKNYNESDAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGRRIGERITDTTFWRNEV 624
Q+ + N +E+ AK N ++ + + R L E Q + D + E+I RN++
Sbjct: 992 QDEMANQDEAVAKLNKEKKHQEESNRKLNED----LQSEEDKVNHL-EKI------RNKL 1040
Query: 625 SIEMERLVATCEKLSDTRRQLERAIAGIEGPLHIVQE 735
+M+ L ++ +R +E+A +EG L + QE
Sbjct: 1041 EQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQE 1077
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = +1
Query: 412 LYTRYTQYEWNQNTIKNYNE-----SDAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGR 576
L+ + + + NT++ NE +DA +E +R D + R+ ++ Q +S R
Sbjct: 124 LFAKLKEELFKNNTLEEVNEMLREENDAALAANEHLRVDATNLSRQLQQLQQQQHTESMR 183
Query: 577 RIGERITDTTFWRNEVSIEMERLVATCEKLSDTRRQL 687
E T +RN+ + +L++ ++ + +RQL
Sbjct: 184 FRSEN----TRYRNQTETQHRKLISLWKEFTAVKRQL 216
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = +1
Query: 412 LYTRYTQYEWNQNTIKNYNE-----SDAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGR 576
L+ + + + NT++ NE +DA +E +R D + R+ ++ Q +S R
Sbjct: 124 LFAKLKEELFKNNTLEEVNEMLREENDAALAANEHLRVDATNLSRQLQQLQQQQHTESMR 183
Query: 577 RIGERITDTTFWRNEVSIEMERLVATCEKLSDTRRQL 687
E T +RN+ + +L++ ++ + +RQL
Sbjct: 184 FRSEN----TRYRNQTETQHRKLISLWKEFTAVKRQL 216
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = +1
Query: 412 LYTRYTQYEWNQNTIKNYNE-----SDAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGR 576
L+ + + + NT++ NE +DA +E +R D + R+ ++ Q +S R
Sbjct: 124 LFAKLKEELFKNNTLEEVNEMLREENDAALAANEHLRVDATNLSRQLQQLQQQQHTESMR 183
Query: 577 RIGERITDTTFWRNEVSIEMERLVATCEKLSDTRRQL 687
E T +RN+ + +L++ ++ + +RQL
Sbjct: 184 FRSEN----TRYRNQTETQHRKLISLWKEFTAVKRQL 216
>AF125463-3|AAD12860.1| 163|Caenorhabditis elegans Hypothetical
protein Y49F6C.8 protein.
Length = 163
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/97 (23%), Positives = 44/97 (45%)
Frame = +1
Query: 334 MAAEPLRFPNLVTGFDRSPEHAARAALYTRYTQYEWNQNTIKNYNESDAKRNFSERVRND 513
MA P F + V G R+ + RA L+ + QN+++ Y E + + + +R
Sbjct: 1 MAQNPNSFTDSVFGMIRNLLVSIRAGLFELTIKQPVTQNSLQRYQE-EHREEKQQYLRQA 59
Query: 514 IMRVLRETDEIGTQGQRDSGRRIGERITDTTFWRNEV 624
I+ + +++E GQ + + I + T RN +
Sbjct: 60 ILDLAEDSEE-EDDGQPLDKETLSKMIAELTIERNNL 95
>Z69386-3|CAA93432.2| 322|Caenorhabditis elegans Hypothetical
protein ZK596.3 protein.
Length = 322
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 576 ENWRKNNRHYVLEERGLYRDGTLGCDLRKAE 668
E+W N HYV+E +Y +GT +L + +
Sbjct: 47 ESWNSNGTHYVIENYKVYPNGTKYYELERPD 77
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 441 EPEHHQELQ*VGREEEFF*KSQERHYAGVKGNRRNWYPRTKGLRAENWRKNNRHYVLEER 620
+ +HQ Q R F +Y GN+R Y +G R+ N R N+ + ++
Sbjct: 43 QQSNHQYQQSHPRRTSFSRDGNTGYYNNHSGNKRQTYNNQRGGRSYNHRGNSNY---QQN 99
Query: 621 GLYRDGTLGC 650
G Y G GC
Sbjct: 100 GEY-SGNQGC 108
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 441 EPEHHQELQ*VGREEEFF*KSQERHYAGVKGNRRNWYPRTKGLRAENWRKNNRHYVLEER 620
+ +HQ Q R F +Y GN+R Y +G R+ N R N+ + ++
Sbjct: 43 QQSNHQYQQSHPRRTSFSRDGNTGYYNNHSGNKRQTYNNQRGGRSYNHRGNSNY---QQN 99
Query: 621 GLYRDGTLGC 650
G Y G GC
Sbjct: 100 GEY-SGNQGC 108
>U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine
receptor, class xa protein4 protein.
Length = 322
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 554 WVPISSVSLNTRIMSFLTLSEKFL 483
WVP+S+V++N ++ ++ S KF+
Sbjct: 188 WVPVSAVTVNVSMILYIKFSRKFI 211
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 463 YNESDAKRNFSERVRNDIMRVLRET-DEIGTQGQR-DSGRRIGERITDTTFWRN-EVSIE 633
YN+S A N+ RNDI +L ++ + Q R++G + TT ++N ++S +
Sbjct: 1312 YNDSHAYENYRNLRRNDIPDILENNIHQMAREEQAFKVARQVGRELMRTTHYKNFQISRK 1371
Query: 634 M 636
M
Sbjct: 1372 M 1372
>Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/86 (22%), Positives = 35/86 (40%)
Frame = +1
Query: 433 YEWNQNTIKNYNESDAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGRRIGERITDTTFW 612
YE+ Q T++ + +++R + + R+ RE + +
Sbjct: 99 YEFTQFTLQKWEHEESRRQEKRKRKRVAERIERENYVHNAMENFNLNMPSVSDVEKLRRE 158
Query: 613 RNEVSIEMERLVATCEKLSDTRRQLE 690
R++ EME+ + CEKL QLE
Sbjct: 159 RDQFKKEMEKYRSKCEKLEKRCEQLE 184
>Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/86 (22%), Positives = 35/86 (40%)
Frame = +1
Query: 433 YEWNQNTIKNYNESDAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGRRIGERITDTTFW 612
YE+ Q T++ + +++R + + R+ RE + +
Sbjct: 99 YEFTQFTLQKWEHEESRRQEKRKRKRVAERIERENYVHNAMENFNLNMPSVSDVEKLRRE 158
Query: 613 RNEVSIEMERLVATCEKLSDTRRQLE 690
R++ EME+ + CEKL QLE
Sbjct: 159 RDQFKKEMEKYRSKCEKLEKRCEQLE 184
>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
protein Y39A1B.2 protein.
Length = 1003
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 605 VVSVILSPILRPESLCP-WVPISSVSLNTRIMSFLT 501
V V +S IL PE + WV S VS+N I+ F+T
Sbjct: 717 VAVVAVSLILIPEPVASLWVSFSIVSINIGILGFMT 752
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,111,959
Number of Sequences: 27780
Number of extensions: 426981
Number of successful extensions: 1459
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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