Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22n23
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 405 FLNQRCIY*KKHINRFKWSKSLKLSTCIITTISGRRNSKYPVLPI-FRVNRSRG 247
           FL+++  +   + N  KW   +  +T ++   +   N  YP++   F ++R  G
Sbjct: 200 FLDKKGFHMDGYTNNSKWDFKVIKATKVLKMYACCPNDTYPMIVYEFSISRHYG 253


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 HV*SKGYVRPLDRFTRKIGRTG 286
           HV +    + +D +  +IGRTG
Sbjct: 522 HVINYDLPKGIDEYVHRIGRTG 543


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 303 RRNSKYPVLP 274
           RRNS+YP+ P
Sbjct: 118 RRNSRYPLRP 127


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 261 LRERSEEQDISNY 299
           L ++SE+ D+SNY
Sbjct: 161 LEKQSEQGDVSNY 173


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 369 INRFKWSKSLKLSTCIITTISG 304
           I R +WSK        +TT SG
Sbjct: 127 IGRIQWSKLQVFDCRYVTTTSG 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,786
Number of Sequences: 438
Number of extensions: 2387
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)