Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22n21
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.88 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   3.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   3.5  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    25   4.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   4.7  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   4.7  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   4.7  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   6.2  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   8.2  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 96   DTSVLKNELGSDYASKELSLDIGPLK----IKLGDFEVSFEEGQWIPASGR 236
            DT     E  + +  +  S+D+  +K    + + DF+VS E   W P +G+
Sbjct: 2429 DTDAKSRERFTHWLMQNASVDLPEIKDFEHVSILDFDVSLETQSWYPIAGK 2479


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 264 RLKNELDRLEEENNMLRLKFEILLDMMTDKTVEAEQAE 377
           + K E  +LEE+    R K+E  L+   D+ V+ ++ E
Sbjct: 159 KAKKEESKLEEDLRNARAKYEESLEEFEDRMVQLKELE 196


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 315 ILACCFLLRACLVRFSIANSPYELHPLFLKQES 217
           +L   FLL   L + SI N PYE H   LK +S
Sbjct: 372 LLRDAFLLIRALCKLSIKNIPYE-HEYDLKSQS 403


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 171 KIKLGDFEVSFEEGQWIPASGRAGAAHKENLRLKNELDRLEEENNMLRLK 320
           K+K  + ++S +E ++   S ++ AA       +++L+ LEEE   LRLK
Sbjct: 28  KLKEVELQLSLKEQEYESLSRKSEAA-------ESQLEELEEETKQLRLK 70


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 483 SWLLLYLFRYFTENVFTISTFYSSVLNL 400
           S +LLY F YF EN+  +    S  L L
Sbjct: 438 SRILLYFFTYFPENILKLKIDTSIFLRL 465


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 210 LLQKILQNLPILS--LTDQYLVTVPLRHNHCR 121
           L Q  LQ L ILS  +TD Y+  V   H HC+
Sbjct: 239 LEQSTLQLLGILSGGMTDDYVSWVAENHAHCQ 270


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 471 LYLFRYFTENVFTISTFYSSVLNLTNFEN 385
           L +FR F + +FT+  F+   L L N  N
Sbjct: 447 LNIFRIFEKMIFTLQHFHEDFLRLQNSFN 475


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 285  CLVRFSIANSPYELHPLFLKQESTALLQKILQNLPILS 172
            CL  F++ +SP + H L  +       +KIL+NL  L+
Sbjct: 1101 CLQSFALKSSPQKSHWLRKRNYIAEKRKKILENLASLN 1138


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 189 FEVSFEEGQWIPASGRAGAAHKENLRLKNELDRLEEEN 302
           FEV       + A  ++G    E L +KN+  RL EE+
Sbjct: 505 FEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEED 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,387
Number of Sequences: 5004
Number of extensions: 30942
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)