Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22n21
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1193 - 11318111-11318318,11318790-11318884,11320097-113201... 31 0.50
07_01_0928 + 7795586-7795615,7795716-7795873,7796151-7796212,779... 31 0.66
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 30 0.88
03_02_0312 - 7326092-7326148,7326415-7326540,7327744-7327821,732... 30 1.2
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 30 1.2
09_06_0122 + 20990754-20991263,20992635-20992748 29 2.7
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 28 3.5
07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291 27 6.2
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48... 27 8.2
07_03_0878 - 22251023-22251166,22251279-22251329,22251425-222515... 27 8.2
06_03_0978 - 26494069-26495223 27 8.2
06_01_0997 - 7752634-7753128,7753280-7753708,7754403-7755196,775... 27 8.2
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762... 27 8.2
02_02_0358 + 9373440-9373500,9375106-9375632 27 8.2
02_02_0356 + 9336558-9337091 27 8.2
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 27 8.2
>07_01_1193 -
11318111-11318318,11318790-11318884,11320097-11320150,
11320311-11320648,11323419-11323704
Length = 326
Score = 31.1 bits (67), Expect = 0.50
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +3
Query: 72 KTIPVRRQDTSVLKNEL-GSDYASKE---LSLDIGPLKIKLGDFEVSFEEG--QWIPASG 233
KT R++ L+ EL G + SKE L ++ L K+ + EE Q + A
Sbjct: 120 KTANTSREEVEKLQIELQGKEDKSKEVKKLRAELASLSEKMKKLKSESEEHERQRLEAEA 179
Query: 234 RAGAAHKENLRLKNELDRLEEENNMLR 314
A K++ L E DRL E+N +L+
Sbjct: 180 HVNALQKQSEELLLEYDRLLEDNQILQ 206
>07_01_0928 +
7795586-7795615,7795716-7795873,7796151-7796212,
7799021-7799081,7799767-7799911
Length = 151
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -1
Query: 477 LLLYLFRYFTENVFTISTFYSSVLNLTNFENAEVQLVPLQLFCQSS 340
+L ++F+ EN+ Y+ +N+TN + + ++ FCQS+
Sbjct: 88 ILEFIFKIIKENLGEKRVLYAICINITNVRLSIMNIIDANAFCQSA 133
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 30.3 bits (65), Expect = 0.88
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 243 AAHKENLRLKNELDRLEEENNMLRLKFEILLDMMTDKTVEAEQ 371
A+H LKNEL+R++ N+ + K + L D T + EQ
Sbjct: 1203 ASHVHEAELKNELNRIKRSNSEYQRKIQSLEQENEDLTSQLEQ 1245
>03_02_0312 -
7326092-7326148,7326415-7326540,7327744-7327821,
7327916-7328178,7328699-7328741,7329581-7329632,
7329705-7329871,7330135-7330194,7330291-7330374,
7330654-7330758,7330840-7330899,7330976-7331032
Length = 383
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 204 EEGQWIPASGRAGAAHKENLRLKNELDRLEEENNMLRLKFEILLDMMTDKTVEAEQA 374
++ +W + RA +EN LK EL +L+E+ N L + L + + K +E E++
Sbjct: 322 KQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSENTTLHEKL--KELEGEKS 376
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 87 RRQDTSVLKNELGSDYASKELSLDIGPL 170
R+Q SVL ELG D++SK S D PL
Sbjct: 316 RKQLNSVLDAELGQDWSSKLTSFDYEPL 343
>09_06_0122 + 20990754-20991263,20992635-20992748
Length = 207
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 225 ASGRAGAAHKENLRLKNELDRLEEENNMLRLKFE 326
A RA + N L+ E+++L++EN MLR+K+E
Sbjct: 137 ARSRARKQARVN-NLETEVEQLKQENKMLRVKYE 169
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 228 SGRAGAAHKENLRLKNELDRLEEENNMLRLK---FEILLDMMTDKTVEAEQAE 377
SG A E+LRLK E R E E N+ R K E +M+ D++ + E+A+
Sbjct: 652 SGVISAQQAEDLRLK-EKKRREREKNLPRKKRRRLEAEREMLEDESEDEEEAK 703
>07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291
Length = 152
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 165 PLKIKLGDFEVSFEEGQWIPASG 233
P +IKLGD SF W P SG
Sbjct: 107 PTRIKLGDGGTSFWVDDWFPDSG 129
>09_01_0028 +
486800-486890,486928-488009,488825-489190,489342-489692
Length = 629
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 42 MPLFSSKFN-PKTIPVRRQDTSVLKNELGSDYASKEL 149
M L S + + +P R+D S K++LGS+Y +++
Sbjct: 276 MKLMSELYGGARNVPYTRKDISNFKSKLGSEYRCRDI 312
>07_03_0878 -
22251023-22251166,22251279-22251329,22251425-22251500,
22251847-22252229,22252983-22253042,22253133-22253368,
22253457-22253559,22254692-22254824,22254930-22255039
Length = 431
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -1
Query: 450 TENVFTISTFYSSVLNLTNFENAEVQLVPLQLFCQSSCPTVFRISILACCFLLRA 286
T N+ +S ++S ++ +N + E +++ L ++C S C + S A F+LRA
Sbjct: 308 TWNMIPLSVLFNSTMDESNPRD-ENEILLLSVYCGSLCKYLTVASGRASVFVLRA 361
>06_03_0978 - 26494069-26495223
Length = 384
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 204 EEGQWIPASGRAGAA 248
EEG+W PA+ R GAA
Sbjct: 203 EEGRWAPAAARRGAA 217
>06_01_0997 -
7752634-7753128,7753280-7753708,7754403-7755196,
7755247-7755574
Length = 681
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 42 MPLFSSKFN-PKTIPVRRQDTSVLKNELGSDYASKEL 149
M L S + + +P R+D S K++LGS+Y +++
Sbjct: 259 MQLMSELYGGARNVPYTRKDISNFKSKLGSEYRCRDI 295
>06_01_0982 +
7627420-7628141,7628190-7628643,7629167-7629823,
7629975-7630469
Length = 775
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 42 MPLFSSKFN-PKTIPVRRQDTSVLKNELGSDYASKEL 149
M L S + + +P R+D S K++LGS+Y +++
Sbjct: 277 MQLMSELYGGARNVPYTRKDISNFKSKLGSEYRCRDI 313
>02_02_0358 + 9373440-9373500,9375106-9375632
Length = 195
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 204 EEGQWIPASGRAGAAHKENLRLKNELDRLEEENNMLRL 317
EEG IPAS + A + ++ LK++L RLEE N L++
Sbjct: 157 EEG--IPASLKKLLAMRCSVDLKDQLKRLEESNQDLQV 192
>02_02_0356 + 9336558-9337091
Length = 177
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 204 EEGQWIPASGRAGAAHKENLRLKNELDRLEEENNMLRL 317
EEG IPAS + A + ++ LK++L RLEE N L++
Sbjct: 139 EEG--IPASLKKLLAMRCSVDLKDQLKRLEESNQDLQV 174
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 204 EEGQWIPASGRAGAAHKENLRLKNELDRLEEENNMLRL 317
EEG IPAS + A + ++ LK++L RLEE N L++
Sbjct: 1232 EEG--IPASLKKLLAMRCSVDLKDQLKRLEESNQDLQV 1267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,019,239
Number of Sequences: 37544
Number of extensions: 170910
Number of successful extensions: 625
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -