Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22n19
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    30   1.7  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    30   1.7  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    30   1.7  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z99281-45|CAC70123.2|  222|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z81136-5|CAB03460.2|  733|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical
           protein F31C3.3 protein.
          Length = 2029

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 109 TLCNKGLSTSRSRSNWINKVSCVHVQASVLLRARHT 2
           T+    L T RSR  W  + SC  +QA +L R R++
Sbjct: 41  TIDELSLETFRSREGWQFETSCSLIQAKLLRRGRNS 76


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 651 PVDIIKGIFFEAAYFRKSKLFESPEPILINGTF 553
           P+  +   F EA+ F  SK FE P P +  G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 651 PVDIIKGIFFEAAYFRKSKLFESPEPILINGTF 553
           P+  +   F EA+ F  SK FE P P +  G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/77 (24%), Positives = 43/77 (55%)
 Frame = +1

Query: 229 SVFYNSGSGTESPR*HRDRKKINKSC*GSWS*LREVSKDMSRREIYKKISRKALRQPKLV 408
           +V  ++ + T SPR ++ + +  KS   +   LR V  +  ++++ KK+ +K ++ PK+ 
Sbjct: 82  TVTTSTSAPTTSPRVYKLKSEARKSLRKA---LRGVPPEKRKKQL-KKMGKKMMKIPKIT 137

Query: 409 GKDVRRTQKSFGILRYT 459
            K+  +  KS+  ++ T
Sbjct: 138 KKESNKLHKSYRKVKIT 154


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 325 LREVSKDMSRREIYKKISRKALRQPKLVGKDVRRTQK 435
           L E +K    RE++K   ++ L+ PKL  K++R  +K
Sbjct: 715 LDEATKVNGFREVFKPAYKQLLKTPKLFPKEIRNIEK 751


>Z99281-45|CAC70123.2|  222|Caenorhabditis elegans Hypothetical
           protein Y57G11C.34 protein.
          Length = 222

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 467 ELFRYAQEVGILFTASAMDM----VSFDFLVNLKVPFIKIGSGDSNNLLFLKYAASKKIP 634
           +L R+AQ+  I  T S  +M    V  D + N++     + S D  N LFLK   S   P
Sbjct: 4   KLARFAQKRWISSTTSTSNMYDPRVFRDPVTNVQELRKPLDSDDERNFLFLKAMKSDATP 63

Query: 635 LIISTGMVDK 664
           +     ++DK
Sbjct: 64  VFYRDHVIDK 73


>Z81136-5|CAB03460.2|  733|Caenorhabditis elegans Hypothetical
           protein W02B8.4 protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -1

Query: 324 LAPASLAAFINFFAISMSPW*FCPASAIIKHGLLPPILMSSVILTSTILS 175
           L+P  L  F+ F  I +SP    P   I+  G+L P ++S ++L   ILS
Sbjct: 612 LSPVVLTPFL-FAPIVLSPLALVPV--ILSPGILNPFILSPLVLCPFILS 658


>AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical
           protein Y32G9A.8 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 150 NQFPVRLDGLEVCSHYAIKVYRPL-VQDQIG 61
           NQFPV++DG E   H+A+K+ + L + D  G
Sbjct: 223 NQFPVQIDGPE--QHFAVKLDQELRIGDSYG 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,998
Number of Sequences: 27780
Number of extensions: 311844
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)