Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22n15
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         27   0.67 
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    25   1.6  
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    25   2.1  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    24   4.7  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    23   6.3  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    23   6.3  

>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 0.67
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +1

Query: 181 SITPNWTLW--KXRLFI*DLFW 240
           S+TPNW  W  +  LF+ +L+W
Sbjct: 388 SLTPNWITWGREPLLFMHELYW 409


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 166 SDTEAIXQLVPVSDNTSCSL 107
           S+T AI Q+VP S+NT  S+
Sbjct: 277 SETNAIIQVVPFSENTLLSV 296


>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 153 LYXNWYPFLITP 118
           L+ NWYP LI P
Sbjct: 27  LFKNWYPLLIAP 38


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 122 HLVLSLHFMNXQTLPSVCSFKFVWIY 45
           HL   L  +   TLPS  SF FV+ Y
Sbjct: 49  HLYRGLSSVLVSTLPSASSFFFVYEY 74


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 52  HTNLKLQTEGNVCXFIKWRESTR 120
           H +++++ +GN   FI W  S +
Sbjct: 41  HVDIEMKKQGNTIKFIVWHGSRK 63


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -1

Query: 251 EVXFQNKSQMNSLFFQSVQF 192
           +V FQN++Q+N+ FF ++Q+
Sbjct: 41  KVVFQNEAQLNN-FFDTLQY 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 972,332
Number of Sequences: 5004
Number of extensions: 15357
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)