Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22n15
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078...    26   3.9  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    26   3.9  
12_02_0445 - 19153580-19154269                                         25   9.0  
08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080     25   9.0  

>10_08_0925 +
           21604871-21605021,21605562-21605881,21606899-21607897,
           21608085-21608126,21608190-21608249,21608915-21608959
          Length = 538

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 110 RARGVIRNGYQLXYSLGI 163
           R RG I NG++L  SLGI
Sbjct: 170 RYRGAINNGFELCISLGI 187


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 276  NSXSNQRLRSXFPKQVSDEQPXFP 205
            N   + RLR  FP+ V+ ++P FP
Sbjct: 3127 NPHESNRLRVRFPRPVARDRPLFP 3150


>12_02_0445 - 19153580-19154269
          Length = 229

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 252 RSXFPKQVSDEQPXFPKCPIWCD*YPXLS 166
           R   P  + D+ P FP CP      P LS
Sbjct: 17  RPGLPPTMPDDDPPFPPCPARSPAAPKLS 45


>08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080
          Length = 463

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 242 FQNKSQMNSLFFQSVQFGV 186
           FQN S +N LFF+S +F +
Sbjct: 271 FQNISTVNKLFFKSDKFNI 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,625,536
Number of Sequences: 37544
Number of extensions: 83837
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)