Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22n10
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   0.64 
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    28   1.5  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   3.4  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   7.9  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   7.9  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.9  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
 Frame = +2

Query: 443  EELNKSMRESEQNVSSGGSYYEACGEDENILVV---PVKTRVNGVLETVQQKV----VNY 601
            + LNK +RE E  +SS  S      E  N  V       +  N ++ET  ++V    VN+
Sbjct: 736  DSLNKKLREFEGILSSNSSLKSEIEERNNQYVTLRENFDSLQNAIMETFDKQVTHCSVNH 795

Query: 602  --DCYLTLKEEFKDAKDSIELLKQKVEHLDNLLK 697
                   LK+E K  +   + L +K+ H +  LK
Sbjct: 796  LVQQIRKLKDENKKDQSGTDKLMKKIYHCEQSLK 829


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 164 LSRPTKKINRDFSDAVLLAEILSVHYPKLVEMHNYPPRNSHS 289
           LS PTKK   DFS+   LA+  S   P + E H   P+  H+
Sbjct: 213 LSSPTKKDLIDFSETRPLAQ-ASRATPDIKEQHAKKPKRKHT 253


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 673 DLLFEQFNRIFSILKFFLQSQIAVVVDHFLLNRLQNTIDPRLHG--HNEDVF 524
           DL+ E     F++ +  +  Q+  V+ H L+N  ++ I  RL    + ED F
Sbjct: 695 DLIKELITSYFNLTRKIIIDQVPKVIMHLLVNASKDAIQNRLVSKLYREDFF 746


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +2

Query: 539 VPVKTRVNGVLETVQQKV----VNYDCYLTLKEEFKDAKDSIELLKQK 670
           +PV   ++ +LE   Q+V    VN+D  L  +EE KD++D   +L  K
Sbjct: 115 LPVINELSDMLEEGYQEVKPYAVNWDNVLKEEEEGKDSQDDPSVLSHK 162


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 673 DLLFEQFNRIFSILKFFLQ 617
           D+ FE  NR++S+ +FF++
Sbjct: 531 DIAFEDLNRMYSVNRFFVK 549


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 366 IVLQHRLSLNFFRTLRLSVSQLLSFKEWLFL 274
           IV+ H+L++++ +TL+L  ++ L    W FL
Sbjct: 149 IVIPHKLAIHYLQTLQLIDNKKLLQITWNFL 179


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 427 VPNHDKYSFNDPW 389
           VPNHD+Y+F+ P+
Sbjct: 212 VPNHDEYAFSYPY 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,093
Number of Sequences: 5004
Number of extensions: 44154
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)