Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22n10
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0273 - 7036125-7037999 32 0.50
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 0.88
05_01_0553 + 4849535-4849553,4850727-4851913 30 2.0
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 2.7
11_06_0576 - 25127807-25128107,25128241-25128357,25128730-251292... 29 3.5
09_02_0045 + 3479503-3480285 29 3.5
05_02_0076 - 6365230-6365240,6365634-6365805,6365990-6366031,636... 29 3.5
12_02_0527 + 20047027-20047281,20048169-20048390,20048996-200493... 29 4.7
07_01_0661 + 4968089-4969741 29 4.7
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732... 28 6.2
05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306... 28 8.2
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 28 8.2
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063... 28 8.2
>03_02_0273 - 7036125-7037999
Length = 624
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 431 IRRDEELNKSMRESEQNVSSGGSYYEACGEDENILVVPVKTRVNGVLETVQ 583
I R+EE+ ++ ++ G SYY A E E V P K V G L +Q
Sbjct: 325 IFREEEIMEATMNLDEQCKLGSSYYRANLEREVFAVKPAKGNVAGELRMMQ 375
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/96 (21%), Positives = 44/96 (45%)
Frame = +2
Query: 410 LVMVRDKIRRDEELNKSMRESEQNVSSGGSYYEACGEDENILVVPVKTRVNGVLETVQQK 589
L++ +D ++ + + ++ + GS A ++EN++ P++ V+ L T +Q+
Sbjct: 2497 LILGKDNDDPKKDSETEVEKEQEETTKDGSCLIASQQEENLVAFPIEKSVDEKL-TFEQE 2555
Query: 590 VVNYDCYLTLKEEFKDAKDSIELLKQKVEHLDNLLK 697
+ KE K+ +E+ QK D LK
Sbjct: 2556 KEKVEGSEETKEPVKEQSYDVEMDVQKSLETDEELK 2591
>05_01_0553 + 4849535-4849553,4850727-4851913
Length = 401
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 413 VMVRDKIRRDEELNKSMRESEQNVSSGGSYYEACGEDENILVVPVKTRVNGVLETVQQKV 592
+++R+K R E ++ +E E+N + Y + N+ V + +Q++V
Sbjct: 302 LLIREKERSHELKSELAKEREKNEALVQLYKQTKESHANLEVANAQ---------LQERV 352
Query: 593 VNYD-CYLTLKEEFKDAKDSIEL 658
D YLTL+E+FK K+S+ L
Sbjct: 353 DGLDKAYLTLEEKFKTLKNSVSL 375
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Frame = +2
Query: 356 CNTMDQLANCAPGVIERVLVMVRDKIRRDEELNKSMRESEQNVSSGG---SYYEAC---- 514
C MD+ + L M D ++RD L K++ ES ++ + C
Sbjct: 1391 CINMDEAEFVTDDLKSDCLAMHADNVQRDASLTKNIEESSASLEGADDEKNNMADCRMEV 1450
Query: 515 GEDENILVVPVKTRVNGVLETVQQKVVNYDCYLTLKEEFKDAKDSIELLKQKVEHLDN 688
G ++ VV +K + N +LE + + + TL ++ ++ +I+L K E+ N
Sbjct: 1451 GNTMSLQVVTMKEKTNFMLENSSVQENDNTGFETLNDKREEQVKNIKLNPLKDENNHN 1508
>11_06_0576 -
25127807-25128107,25128241-25128357,25128730-25129271,
25129353-25129814,25129893-25130626,25130715-25130742
Length = 727
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 605 CYLTLKEEFKDAKDSIELLKQKVEHLDNL 691
C L + +EF+++ ++ LL+Q+ EHL L
Sbjct: 160 CSLKITQEFRESSEAHRLLQQRNEHLHRL 188
>09_02_0045 + 3479503-3480285
Length = 260
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +2
Query: 395 VIERV-LVMVRDKIRRDEELNKSMRESEQNVSSGGSYYEACGEDENILVVPVKTRVNGVL 571
++ER +++R+K R E ++ ++E E+N + Y + N+ V +
Sbjct: 103 ILERQETLLIREKERSHELKSELVKEREKNEALVRLYKQTKESHANLDVANAQ------- 155
Query: 572 ETVQQKVVNYD-CYLTLKEEFKDAKDSIEL 658
+Q++V D YLTL+E+F+ K+S+ L
Sbjct: 156 --LQERVDGLDKAYLTLEEKFETLKNSVSL 183
>05_02_0076 -
6365230-6365240,6365634-6365805,6365990-6366031,
6366274-6366373,6366468-6366529,6367069-6367150,
6368041-6368072
Length = 166
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 179 KKINRDFSDAVLLAEILSVHY----PKLVEMHNYPPRNSHSLKLNNWLTLNRKVLKKL 340
KK N D S+A +AEI + HY KL + ++ +L +N T+N + LK+L
Sbjct: 20 KKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQL 77
>12_02_0527 +
20047027-20047281,20048169-20048390,20048996-20049354,
20049706-20049766,20049911-20050018
Length = 334
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 348 AYAVTQWISSLIALQGSLNEY--LSWFGTKYV 437
A+ W ++LIA+ G LN+Y +SWF V
Sbjct: 127 AWDTLTWFAALIAMAGYLNKYGLISWFSETVV 158
>07_01_0661 + 4968089-4969741
Length = 550
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/102 (28%), Positives = 49/102 (48%)
Frame = +2
Query: 131 ESVLAWVDTFKLSRPTKKINRDFSDAVLLAEILSVHYPKLVEMHNYPPRNSHSLKLNNWL 310
E++ +D +L + D S+A L+A I + L +H+ S L LN
Sbjct: 440 EAIYEKLDEIQLKLTSAGYKPDLSEAPLVASIDNAKGAAL-RLHSERLAISFGL-LNATP 497
Query: 311 TLNRKVLKKLRLSLCCNTMDQLANCAPGVIERVLVMVRDKIR 436
++LK LR+ C+T+ +L + G V ++VRD+IR
Sbjct: 498 GAPIRILKNLRVCKDCHTISKLISKLYG----VEIIVRDRIR 535
>10_08_1024 +
22371260-22371481,22371514-22372188,22372291-22373236,
22389377-22389552
Length = 672
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 319 PQGSEEVEAEPML*HNGSAR*LRSRGH*TSTCHGSGQNTSRRRVEQ 456
P GS +P L G+ RSRGH + H + RRVE+
Sbjct: 159 PTGSRVPHHQPSLSVTGTGSSRRSRGHDERSVHSLPERHRERRVER 204
>05_05_0045 +
21830291-21830343,21830446-21830541,21830620-21830694,
21831329-21831403,21831497-21831719,21831813-21832056,
21832621-21832769,21832913-21832944,21832991-21833078,
21833157-21833438,21833542-21834243
Length = 672
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -2
Query: 637 ILKFFLQSQIAVVVDHFLLNR----LQNTIDPRLHGHNEDV 527
IL+ +Q ++ + + ++L R ++TI P LHG+ +DV
Sbjct: 437 ILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDV 477
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -2
Query: 637 ILKFFLQSQIAVVVDHFLLNR----LQNTIDPRLHGHNEDV 527
IL+ +Q ++ + + ++L R ++TI P LHG+ +DV
Sbjct: 500 ILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDV 540
>01_06_1350 +
36505926-36505978,36506081-36506176,36506255-36506329,
36506964-36507038,36507132-36507348,36507442-36507685,
36508250-36508707,36508786-36509067,36509171-36509872
Length = 733
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -2
Query: 637 ILKFFLQSQIAVVVDHFLLNR----LQNTIDPRLHGHNEDV 527
IL+ +Q ++ + + ++L R ++TI P LHG+ +DV
Sbjct: 498 ILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDV 538
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,801
Number of Sequences: 37544
Number of extensions: 284118
Number of successful extensions: 882
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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