Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22n08
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 29 0.68
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 29 0.90
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 29 0.90
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 29 0.90
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 29 0.90
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 29 0.90
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 28 1.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 1.6
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 28 1.6
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 2.1
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 2.1
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 2.7
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 2.7
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 2.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.7
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 27 3.6
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 3.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.8
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 26 6.3
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 25 8.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 8.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 8.4
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 29.1 bits (62), Expect = 0.68
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 272 VLRFFCRMYLRQYFV--CCDPYWSIVSDISEYGMYSRPYGIPETCLDNNFTLKNLFYLN* 99
+ R + R+ +YF+ C P+++ D S Y S C D NF ++NLF
Sbjct: 869 ISRAYLRLTASKYFLKLCSIPFYAEHIDFSSYVQISL------LCQDENFDVRNLFLTKL 922
Query: 98 MCEL*RNHLDIFFY 57
+L L I +Y
Sbjct: 923 QKQLQLKKLPISYY 936
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 EDTYDRKIEE-LKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQDKVTALRK 418
ED + +E+ L L EK++K+ R++ SRQS+ N I + D M +K+
Sbjct: 23 EDVCNVDLEQGLDLCKPEKVNKQSQRSRQSRQSLFT--NTIKPQKDKMNIKTNKIKEFLN 80
Query: 419 DLHT 430
DL T
Sbjct: 81 DLFT 84
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 EDTYDRKIEE-LKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQDKVTALRK 418
ED + +E+ L L EK++K+ R++ SRQS+ N I + D M +K+
Sbjct: 23 EDVCNVDLEQGLDLCKPEKVNKQSQRSRQSRQSLFT--NTIKPQKDKMNIKTNKIKEFLN 80
Query: 419 DLHT 430
DL T
Sbjct: 81 DLFT 84
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 EDTYDRKIEE-LKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQDKVTALRK 418
ED + +E+ L L EK++K+ R++ SRQS+ N I + D M +K+
Sbjct: 23 EDVCNVDLEQGLDLCKPEKVNKQSQRSRQSRQSLFT--NTIKPQKDKMNIKTNKIKEFLN 80
Query: 419 DLHT 430
DL T
Sbjct: 81 DLFT 84
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 EDTYDRKIEE-LKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQDKVTALRK 418
ED + +E+ L L EK++K+ R++ SRQS+ N I + D M +K+
Sbjct: 23 EDVCNVDLEQGLDLCKPEKVNKQSQRSRQSRQSLFT--NTIKPQKDKMNIKTNKIKEFLN 80
Query: 419 DLHT 430
DL T
Sbjct: 81 DLFT 84
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 EDTYDRKIEE-LKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQDKVTALRK 418
ED + +E+ L L EK++K+ R++ SRQS+ N I + D M +K+
Sbjct: 23 EDVCNVDLEQGLDLCKPEKVNKQSQRSRQSRQSLFT--NTIKPQKDKMNIKTNKIKEFLN 80
Query: 419 DLHT 430
DL T
Sbjct: 81 DLFT 84
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 203 LSTNTDHNKQNTDEDTYDRKIEELKLEVSEKID 301
+ST+ DH+K N D+ + ++KLE+ ++
Sbjct: 555 VSTSNDHSKNNLPSDSSSTSLGKVKLELCNSLE 587
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.9 bits (59), Expect = 1.6
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Frame = +2
Query: 209 TNTDHNKQNTDEDTYDRKIEELKLEVSEKI---DKEIDRAKTS----RQSILEKFNKIDS 367
+N D NK+ + + +++ + E +EK+ D+EI+R K + + L + DS
Sbjct: 920 SNDDQNKEKSVNNEKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLKDS 979
Query: 368 KIDSMLEIQDKVTALRKDLHTA-EYTL---SELTAKIAK 472
++ +++ K L K L A EY L EL +K K
Sbjct: 980 DNRTISDLESKNKELEKKLKEADEYWLLIVEELESKRTK 1018
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 179 SRIQKCRTLSTNTDHNK-QNTDEDTYDRKIEELKLEVSEKIDKEIDRAKTSRQSILEKFN 355
S I+ ST T H++ + T+E+ R EELK + +K ++ + R LE+
Sbjct: 13 SSIEMAEFHSTKTSHDQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEE-K 71
Query: 356 KIDSKI 373
K + KI
Sbjct: 72 KTNYKI 77
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 161 HKACYTSRIQKCRTLSTNTDHNKQNTDEDTYDRKIEELKLEVSEKIDKEIDRAKTSRQSI 340
H+A + +Q+ R+ +K + Y + ELKL++ + K D +K + +
Sbjct: 531 HEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKKNEDLSKLEVEKV 590
Query: 341 LEKFN 355
E N
Sbjct: 591 EEIAN 595
>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 230 QNTDEDTYDRKIEELKLEVSEKIDKEID 313
Q T+ED Y RK ++ +VSE I+KE +
Sbjct: 10 QETEEDVYRRKTARIRRKVSE-IEKECE 36
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 218 DHNKQNTDEDTYDRKIEELKLEVSEKI-DKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQ 394
D N T + I EL+L+ + ++E+D ++T ++D+++DS+ E
Sbjct: 724 DFNLLETANSDAEASIHELELQPLNAVNEREVDISQTDMTPSTALDTRVDTRVDSLPEFS 783
Query: 395 DKV 403
+ +
Sbjct: 784 NLI 786
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 221 HNKQNTDEDTYDRKIEELKLEVSEKIDKEIDRAKTSRQSI 340
+N +D Y RK+EELK E+ K + + ++ +I
Sbjct: 114 NNSIKQKQDEYQRKLEELKKEIEYAKTKSLFHEREAQDAI 153
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 540 KNRSLKNWRYFRKIKELKIISLLQC-LC 620
KNR++ N Y + LK+I LQC LC
Sbjct: 722 KNRAIYNQIYPEAVNRLKLIETLQCSLC 749
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 260 KIEELKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQDKVTALRKDLH 427
K+E ++ EV+E IDK++ ++ EK KI SK+ +++ T ++ +H
Sbjct: 90 KVENIRYEVNEVIDKKV---APCIKAFNEKARKIGSKVLDGDNLRELYTTGKERIH 142
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/87 (21%), Positives = 39/87 (44%)
Frame = +2
Query: 215 TDHNKQNTDEDTYDRKIEELKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQ 394
T N ++ + K + L+ K+I+ S +LEK +K+++ + E++
Sbjct: 885 TQERLANIEDSFSETKQQNENLQRESASLKQINNELESE--LLEKTSKVETLLSEQNELK 942
Query: 395 DKVTALRKDLHTAEYTLSELTAKIAKI 475
+K++ KDL + L L A +
Sbjct: 943 EKLSLEEKDLLDTKGELESLRENNATV 969
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +3
Query: 528 LSGQKNRSLKNWR----YFRKIKELKIISLLQCLC 620
LSG +++L+ W+ YF IK +++ + + CLC
Sbjct: 72 LSGASDKTLRLWQLEEEYFTCIKTIELEATVNCLC 106
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +2
Query: 188 QKCRTLSTNTDHNKQNTDEDTYDRKIEELKLEVSEKIDK-----EIDRAKTSRQSILEKF 352
+K + + + ++N+ E+T+D + +K +V EK+ + ++ K ++
Sbjct: 1616 EKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEKLKENSANFDVKLKKVVAETEFRSK 1675
Query: 353 NKIDSKIDSMLEIQDKVTALRKDLHTAEYTLS 448
KI ++Q+K+T L + + LS
Sbjct: 1676 AKISVYEKKTRDLQNKITQLEETIENLNKQLS 1707
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 197 RTLSTNTDHNKQNTDEDTYDRKIEELKLEVSEKIDKEIDRAKTSRQS 337
R++ TN + + + DE+ + +EE + +K+D + D + +QS
Sbjct: 507 RSMFTNAEIHDFDGDEEEVFKDVEEDDVSEDQKVDSDKDGKLSDKQS 553
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 140 LNMSQVFHKACYTSRIQKCRTLSTNTDHNKQNTDEDTYDRKIEELKLEVSEKIDKEIDRA 319
L+ + K C SR + L +NT ++ ++ K + ++ K+ KE+DR
Sbjct: 364 LDKLKKMRKLC--SRSLEPYELDSNTQRKRKRYEDSLKKSKTLDKVDSLNRKMAKELDR- 420
Query: 320 KTSRQSILEKFNKID-SKIDSMLEI 391
K S++ L+K NK+ +K + + EI
Sbjct: 421 KNSKE--LQKINKVKRTKEECLSEI 443
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +2
Query: 263 IEELKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQDKVTALRKDLHTAEYT 442
+EE ++ E + + D+ + +K++ I K DS+ E +K + K+ E
Sbjct: 1385 LEEQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTGKNSSILEAQ 1444
Query: 443 LSELTAKIAKIE 478
L E+T + +E
Sbjct: 1445 LREITKQKNMLE 1456
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.8 bits (54), Expect = 6.3
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 242 EDTYDRKIEE-LKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLEIQDKVTALRK 418
ED + +E+ L L EK++K+ R++ SRQS+ N I + D M +K+
Sbjct: 23 EDVCNVDLEQGLDLCKPEKVNKQSQRSRQSRQSLFT--NTIKPQKDKMNIKTNKIKEFLN 80
Query: 419 DLHT 430
D T
Sbjct: 81 DPFT 84
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 203 LSTNTDHNKQNTDEDTYDRKIEELKLEVSEKIDKEIDRAKTSRQSILEKFNKI 361
L N + +K +T D IEE+ +V +KEID A S + + + K+
Sbjct: 23 LYINGEWHKSAETWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKV 75
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 179 SRIQKCRTLSTNTDHNKQNTDE-DTYDRKIEELKLEVSEKIDKEIDRAKTSRQSILEKFN 355
SR+ ST++ +N +E + D +E + + +K++KE+ + + S +E +
Sbjct: 912 SRLLDASNRSTSSFETSKNMEEYERIDAMAKE-QSRICQKLEKELSIIQLTYNSRIEYYK 970
Query: 356 KIDSKIDSML 385
++ DS++
Sbjct: 971 QLQEISDSLM 980
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 266 EELKLEVSEKIDKEIDRAKTSRQSILEKFNKIDSKIDSMLE 388
+ ++ E+ EKI+KE+ T RQ IL + + I +LE
Sbjct: 1074 KNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLE 1114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,884
Number of Sequences: 5004
Number of extensions: 53623
Number of successful extensions: 206
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -