Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22n05
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    29   2.6  
AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    29   3.4  

>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 616 YIYEHQTVIGIRANYKFVVFFSIYTHSWIFTTIYGNPDEYTS 491
           Y   +  +I   AN     FF  +THS  F  +Y NPD+Y S
Sbjct: 376 YALNYYKIINRYANTVVGQFFG-HTHSEKFYMMYANPDDYKS 416


>AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.2 protein.
          Length = 619

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 225 HFSLIHSQVHKGFLLLKLQLENVTRICNPSTR*YLDTSIIPQNI 94
           HFS I S  H GFL+ +LQ   + R    S    L T ++P +I
Sbjct: 293 HFSAIWSMQHNGFLIYELQPVPLLRQHVTSVNGNLLTRVVPASI 336


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 155 VTFSNCSFRSKNPLWTWECINEKCV--PSRPDPTNKLQSLETCNMLCAGG 298
           V FS  SF+S++ L T +   E+    P+ P+PT  LQ   T   + AGG
Sbjct: 55  VRFSQFSFQSRDDLTTIDDEEEEEYRKPAPPEPTKFLQVSRTTVRMLAGG 104


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 155 VTFSNCSFRSKNPLWTWECINEKCV--PSRPDPTNKLQSLETCNMLCAGG 298
           V FS  SF+S++ L T +   E+    P+ P+PT  LQ   T   + AGG
Sbjct: 55  VRFSQFSFQSRDDLTTIDDEEEEEYRKPAPPEPTKFLQVSRTTVRMLAGG 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,033,919
Number of Sequences: 27780
Number of extensions: 413820
Number of successful extensions: 974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)