Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22m24
         (129 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   3.2  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    23   5.6  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    23   7.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    22   9.7  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    22   9.7  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 102  LIPTNMRMQMSQKYTLKEPILCXFSMLXE 16
            LI + M +  S+KYT   P++  ++ L E
Sbjct: 1192 LITSRMSVDFSEKYTQLIPVITTYTHLSE 1220


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 50  SLRVYFCDICILMLVGINYFLLXEVV 127
           SL  +FC +C++  +G  +  L E +
Sbjct: 89  SLITFFCKLCVIFGLGFVFTYLAEQI 114


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 20  FNIENXHKMGSLRVY--FCDICILMLVGINYFLL 115
           F I++  ++GS+ +    C + +L L+G  +FL+
Sbjct: 243 FAIKSEGELGSVFLISLICSVLVLCLLGYEFFLV 276


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 51   P*GYIFATFAFSCWSGLIIFYXLKLY 128
            P   +F T  F CW     FY +K Y
Sbjct: 1306 PFNLVFGTLFFLCW-----FYPIKFY 1326


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 24  TLKTNIRWAP*GYIFAT 74
           TL   + W P GYIF T
Sbjct: 216 TLLRFLNWIPLGYIFET 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 416,928
Number of Sequences: 5004
Number of extensions: 3828
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)