Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22m24
         (129 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    26   4.2  
U41039-2|AAX88821.1|  141|Caenorhabditis elegans Saposin-like pr...    25   9.8  

>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 98  SRPT*ECKCRKNIPSRSP 45
           SR   EC CR   P+RSP
Sbjct: 101 SRSQNECSCRNRAPARSP 118


>U41039-2|AAX88821.1|  141|Caenorhabditis elegans Saposin-like
           protein family protein22 protein.
          Length = 141

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 11  TXSFNIENXHKMGSLRVYFCDICILMLVGINY 106
           T  + +E  ++M  +    CD+C+  + G+NY
Sbjct: 38  TNEYYVEKVNQMAGIS---CDLCMRAVYGVNY 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,148
Number of Sequences: 27780
Number of extensions: 21655
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)