Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22m24
         (129 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   3.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   5.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   7.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   7.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              18   9.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    18   9.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 57  GYIFATFAFSCWSGLIIFYXLKL 125
           G  +AT   SCW+   I+Y + L
Sbjct: 99  GIGYATCVLSCWTN--IYYIIIL 119


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 57  GYIFATFAFSCWSGLIIFYXLKL 125
           G  +AT   SCW+   I+Y + L
Sbjct: 152 GIGYATCVLSCWTN--IYYIIIL 172


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 95  RPT*ECKCRKNIPSRSPS 42
           RP   C     +PS+SP+
Sbjct: 584 RPQRACSTTGGVPSKSPT 601


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 103 INPDQHENANVAKIYPQGAHLMXVF 29
           INP   +NA +    P+ A +   F
Sbjct: 233 INPCIFDNATIVNNGPEAAKMAKAF 257


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 10  YXFXQH*KXT*DGLLEGIFLRHLHSHVGR 96
           Y    H +    G +  +FL   H H GR
Sbjct: 520 YKIAVHSEQNVPGAVVRVFLGPKHDHQGR 548


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 5   VXTXSFNIENXHKMGSLRVYFCDICILMLVGINYFLLXE 121
           V   SFN++       ++VY   + I++L  +++++  E
Sbjct: 233 VLQVSFNLQRHTGYFLIQVYVPCVLIVVLSWVSFWIHRE 271


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +2

Query: 53 LRVYFCDIC 79
          LR Y C IC
Sbjct: 70 LRAYTCPIC 78


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 102 LIPTNMRMQMSQKYTLK 52
           L+P    + ++ KY LK
Sbjct: 869 LVPLEGNLMINNKYALK 885


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,243
Number of Sequences: 438
Number of extensions: 310
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)