Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22m22
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.0  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   2.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/80 (21%), Positives = 31/80 (38%)
 Frame = +2

Query: 119 DPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEELAANGGPTSSSD 298
           +PA H    +G   SP+       +   + D P +    DD   E E   ++G  +   +
Sbjct: 658 EPAVHI-KQEGQ--SPEGGKLTRLIKRELVDAPADQEGDDDQVDEREYPESHGHDSGQDE 714

Query: 299 VLDVEPSIAPPAQEEHPVVE 358
            +  + S+AP        +E
Sbjct: 715 DMAEDLSMAPDIMTPEDQIE 734


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 104 TKMESDPATHSDSHDGAEVSPQADNQ 181
           +KME DPAT  D+        QADNQ
Sbjct: 83  SKMEIDPATQKDA---GYYECQADNQ 105


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 120 TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 227
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 120 TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 227
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 605 PTDSGVGEVEGAPSVQDDESSTM 673
           P DSGV +VE + S   +E + +
Sbjct: 245 PADSGVSDVESSTSSGGNEDANL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,207
Number of Sequences: 438
Number of extensions: 2770
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)