Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22m19
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.9  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   5.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    24   8.8  

>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 95  PNICQTGWSY*FCTAIKLSMTTSSVNYWKRLW 190
           PN  + GW+    T   L  T  S+ +W+ +W
Sbjct: 35  PNETKWGWNIRIATFRSLLNTIPSIPHWRTMW 66


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 273 LDWLVTNKTSLRTLPNFSHSIRIKQSCSL*CXHFXI--IL*ADISNILRL 416
           L W    KT L+ +P   H     QSCS     + +  IL   IS +L++
Sbjct: 54  LIWFYYQKTPLKWIPFLGHFFNTWQSCSFPPRRYLLAKILSGRISELLKV 103


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 409 NIFEISAHNIIXKCXHYSEQLCL 341
           +IFE+  H +I KC   S++ C+
Sbjct: 270 HIFELRYHIMIKKCLETSKRFCI 292


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 37 VNIYTKLFSIISTFKILFC 93
          +NIY K+F++IST  +  C
Sbjct: 35 INIYLKIFTLISTPDLCNC 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,175
Number of Sequences: 5004
Number of extensions: 28920
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)