Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22m19
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252...    28   2.9  

>12_02_1071 +
           25824311-25824460,25824774-25824857,25825168-25825246,
           25825334-25825428,25825940-25826067,25826160-25826393,
           25826509-25826683,25826716-25826748,25827292-25827375,
           25827929-25828169,25828275-25828453,25828800-25828873,
           25830800-25830950,25831178-25831252,25831748-25831778,
           25832107-25832339
          Length = 681

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 217 SQTLRSCPAP*PLPIIYTTRCH 152
           S+  R  P+P P P +YT RCH
Sbjct: 544 SEPSRLFPSPNPYPDLYTRRCH 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,581,476
Number of Sequences: 37544
Number of extensions: 161580
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)