Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22m16
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    59   4e-09
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
 Frame = +3

Query: 378 LGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPLSKLVSWLPYF- 554
           +GT V+   V +L        S + + P  L+LE+PFNNLKD +  HP+  + SW+  F 
Sbjct: 192 MGTGVSCKLVQDL--------SREQQPPCGLILESPFNNLKDAVTNHPIFTVFSWMNDFM 243

Query: 555 -KNTFVKPFTDSPDYSFTTDEYLAVVPDLPILMLHSKGDRVVPYEL 689
             +  ++P  +S   +  +D+ + +V   PI++LH++ D+++P +L
Sbjct: 244 VDHIIIRPL-NSVGLTMRSDKRIRLV-SCPIIILHAEDDKILPVKL 287


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 214 RGSTATWNTRTPAVSEAPVAKRSPKTMLRRKYST 113
           RGSTA   TR P  + AP A R+P    R   +T
Sbjct: 298 RGSTAAPGTRAPPATRAPPATRAPPATTRAPPAT 331


>Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical
           protein R74.8b protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 213 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 338
           LM R  K    ++V +  + +P  + YD  S   + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227


>Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical
           protein R74.8a protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 213 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 338
           LM R  K    ++V +  + +P  + YD  S   + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 648 SKSEGPEPRRDTHQS*TNSREN-R*TVLRTYS*SRAARKPVSIEDVWRFRPS 496
           S+S  PE RRD     T  +EN   + LR     + A +  S +D W  +P+
Sbjct: 380 SRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKPT 431


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 648 SKSEGPEPRRDTHQS*TNSREN-R*TVLRTYS*SRAARKPVSIEDVWRFRPS 496
           S+S  PE RRD     T  +EN   + LR     + A +  S +D W  +P+
Sbjct: 380 SRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKPT 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,065,373
Number of Sequences: 27780
Number of extensions: 311200
Number of successful extensions: 1005
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)