Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22m15
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21323-7|AAA62551.1| 465|Caenorhabditis elegans Hypothetical pr... 31 0.62
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 31 1.1
Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical pr... 29 2.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 3.3
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 3.3
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 3.3
Z83114-4|CAB05554.4| 739|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z80214-1|CAB02262.1| 500|Caenorhabditis elegans Hypothetical pr... 29 4.4
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 28 7.7
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ... 28 7.7
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 28 7.7
>U21323-7|AAA62551.1| 465|Caenorhabditis elegans Hypothetical
protein C45G9.8 protein.
Length = 465
Score = 31.5 bits (68), Expect = 0.62
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Frame = +2
Query: 173 VNKANPAAFLFRISLADCNTHGKIAKSIAILQSKLQKSTKSGSEDEAKCAKCKK------ 334
V+ +P + L + +TH S I +S +K TK+GS+ + K KK
Sbjct: 79 VHHESPDSVLTECATMSTSTHVMPNSSSTISKSATEKKTKTGSKKVTRSKKSKKTKRRSS 138
Query: 335 --IIDLVFGPNKPIVHEDSKDAHVFNKASDKCKD 430
+ +KP+ + KD+ K K KD
Sbjct: 139 TTVTTTTISNSKPVTPDKDKDSKDQRKQRTKRKD 172
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = -2
Query: 609 KRIPILLSLGK-IVRSSLGKRVAFPSMYLSSHFASLPKI-SSIIFSHL---TQLFSSALN 445
KRI ++ L K + S+L + A P + S+F + I +S+I SH TQ F
Sbjct: 376 KRILFVMELEKPYLSSNLLSQFAEPILLRLSNFHRVQGILNSLIMSHTILRTQYFEDYQY 435
Query: 444 LDKATSLHLSLALLKTCASLESSCTIGLLGPNTKSIIFLHLA 319
L T L++ + ++ S+ L P T +IF H++
Sbjct: 436 LLSGTETFLAILEKSSVSNPLSAIQCSKLSPETLQLIFHHIS 477
>Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical
protein K05C4.9 protein.
Length = 724
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 474 LTQLFSSALNLDKATSLHLSLALLKTCASLESSCTIGLLGPNTKSI 337
L++LF S L+ + L + LL+ C S S C + + G N S+
Sbjct: 151 LSELFPSLKTLNVSNILFENDELLRLCVSFPSLCVLDISGTNIASL 196
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.1 bits (62), Expect = 3.3
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 8/164 (4%)
Frame = +2
Query: 248 KSIAILQSKLQKSTKSGSEDEAKCAK-----CKKIIDLVFGPNKPIVHEDSKDAHVFNKA 412
K A + K +K K E +AK K K+ D +K + DA + +
Sbjct: 7682 KQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKEK 7741
Query: 413 SDKCKDVALSRLSADENSCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNEDLTILPKDN 592
DK K +L + ++ +K EK D+ ++A D K +L E L KD
Sbjct: 7742 DDKLKQEKNDKLKQEADAKLKKEK--DDKLKQEA--DAKLKKEKDDKLKQETDAKLKKDK 7797
Query: 593 NIGIRLDNTDAK---NVGEKLKEAAICLAINDKSRQKSSLGDGK 715
+ ++ + DAK + +KLK+ A DK + DGK
Sbjct: 7798 DDKLKQE-ADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGK 7840
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.1 bits (62), Expect = 3.3
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 8/164 (4%)
Frame = +2
Query: 248 KSIAILQSKLQKSTKSGSEDEAKCAK-----CKKIIDLVFGPNKPIVHEDSKDAHVFNKA 412
K A + K +K K E +AK K K+ D +K + DA + +
Sbjct: 7702 KQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKEK 7761
Query: 413 SDKCKDVALSRLSADENSCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNEDLTILPKDN 592
DK K +L + ++ +K EK D+ ++A D K +L E L KD
Sbjct: 7762 DDKLKQEKNDKLKQEADAKLKKEK--DDKLKQEA--DAKLKKEKDDKLKQETDAKLKKDK 7817
Query: 593 NIGIRLDNTDAK---NVGEKLKEAAICLAINDKSRQKSSLGDGK 715
+ ++ + DAK + +KLK+ A DK + DGK
Sbjct: 7818 DDKLKQE-ADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGK 7860
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.1 bits (62), Expect = 3.3
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 8/164 (4%)
Frame = +2
Query: 248 KSIAILQSKLQKSTKSGSEDEAKCAK-----CKKIIDLVFGPNKPIVHEDSKDAHVFNKA 412
K A + K +K K E +AK K K+ D +K + DA + +
Sbjct: 7702 KQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKEK 7761
Query: 413 SDKCKDVALSRLSADENSCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNEDLTILPKDN 592
DK K +L + ++ +K EK D+ ++A D K +L E L KD
Sbjct: 7762 DDKLKQEKNDKLKQEADAKLKKEK--DDKLKQEA--DAKLKKEKDDKLKQETDAKLKKDK 7817
Query: 593 NIGIRLDNTDAK---NVGEKLKEAAICLAINDKSRQKSSLGDGK 715
+ ++ + DAK + +KLK+ A DK + DGK
Sbjct: 7818 DDKLKQE-ADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGK 7860
>Z83114-4|CAB05554.4| 739|Caenorhabditis elegans Hypothetical
protein K09B11.10 protein.
Length = 739
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 514 CVFTKDLINYLLAFNTTIFIGT*SR*SNIFAFIAGFVENMCIF 386
C FTKD N + ++ + G R SN+F G N+ +F
Sbjct: 452 CDFTKDYCNQWVNYDGVVKYGVMPRDSNVFPVPKGVKGNVAVF 494
>Z80214-1|CAB02262.1| 500|Caenorhabditis elegans Hypothetical
protein C27D8.2 protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +2
Query: 209 ISLADCNTHGKIAKSIAILQSKLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSK 388
++ A N H + S K++K + ++ A +++IDL+ K + E S
Sbjct: 294 MNTAPFNAHSSLPLSRPAFNMKMKKCKEPKAKPTFDPATAQRVIDLINTDPKTVKTERSV 353
Query: 389 DAHVFNK--ASDKCKDVALSRLSADENSCVKCEKIIDEIFGKDAK 517
+ + F K +K +S+ + ++ C E + +++ K K
Sbjct: 354 EKNKFKKKQKEEKKAKKQISKSTKKKSKCACIEYVKNKLTEKKKK 398
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 326 CKKIIDLVFGPNKPIVHEDSKDAHVFNKASDKCKDVALSRLSADENSC 469
C +I L G + V+ED + + + SD +DV + LS D ++C
Sbjct: 185 CDMLISL--GIDSRTVYEDEFERPLLKETSDYYRDVCKNWLSGDNDAC 230
>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
protein Y92H12A.5 protein.
Length = 1375
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 446 LSADENSCVKCEKIIDEIFGKDAKWD 523
LS S V C+ I+D IF +D WD
Sbjct: 182 LSNPSFSSVICQLIVDNIFDRDELWD 207
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 326 CKKIIDLVFGPNKPIVHEDSKDAHVFNKASDKCKDVALSRLSADENSC 469
C +I L G + V+ED + + + SD +DV + LS D ++C
Sbjct: 185 CDMLISL--GIDSRTVYEDEFERPLLKETSDYYRDVCKNWLSGDNDAC 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,899,548
Number of Sequences: 27780
Number of extensions: 342648
Number of successful extensions: 1179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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