Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22m01
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.0  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   7.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   7.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   7.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   7.0  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 659 NVTKISLFHFNHRIKFHHRVF 597
           ++T I L HF  +IK  H VF
Sbjct: 258 SLTNIQLEHFEMKIKRKHNVF 278


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 542 IFIHFKFITFSNQIQIQFIFTLYRIYFSVC 453
           +F+ F F+    ++Q  +    Y IY S+C
Sbjct: 22  LFVLFSFLRTRTKLQPTYFHHTYIIYESLC 51


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 542 IFIHFKFITFSNQIQIQFIFTLYRIYFSVC 453
           +F+ F F+    ++Q  +    Y IY S+C
Sbjct: 22  LFVLFSFLRTRTKLQPTYFHHTYIIYESLC 51


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 63  KYFGKQSALTRFVHPRDVKSQPSI 134
           +Y G  ++  RF+ P   + +PS+
Sbjct: 376 RYIGPPTSFPRFIPPNAYRFRPSL 399


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 63  KYFGKQSALTRFVHPRDVKSQPSI 134
           +Y G  ++  RF+ P   + +PS+
Sbjct: 376 RYIGPPTSFPRFIPPNAYRFRPSL 399


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 63  KYFGKQSALTRFVHPRDVKSQPSI 134
           +Y G  ++  RF+ P   + +PS+
Sbjct: 376 RYIGPPTSFPRFIPPNAYRFRPSL 399


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 63  KYFGKQSALTRFVHPRDVKSQPSI 134
           +Y G  ++  RF+ P   + +PS+
Sbjct: 376 RYIGPPTSFPRFIPPNAYRFRPSL 399


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 63  KYFGKQSALTRFVHPRDVKSQPSI 134
           +Y G  ++  RF+ P   + +PS+
Sbjct: 365 RYIGPPTSFPRFIPPNAYRFRPSL 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,404
Number of Sequences: 438
Number of extensions: 4014
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)