Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l17
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    27   2.9  
SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a...    26   5.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   5.0  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   8.7  

>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +1

Query: 151 FIVRVVNTRNLATKIQQLNENVNPVVFEKLTGVDKGIALCGLNSPKDRNALGFTLIDAMR 330
           F+   +N   +  K+  LN+N       K    D G  LC     +   A+ FT + A++
Sbjct: 131 FLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLC--PGAESHGAMVFTCVAALK 188

Query: 331 EVNQIIREDTKL 366
            +N++   D +L
Sbjct: 189 ILNKLDLIDEEL 200


>SPCC1739.07 |||substrate-specific nuclear cofactor for exosome
           activity |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 133

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 145 RSFIVRVVNTRNLATKIQQLNENVNPVVFEKLTGVDKGIALCGLNSPK 288
           R  +  +   +N  +KIQQ  +NVNP   E +   +  I+    N PK
Sbjct: 73  RPVMQELQRVKNYISKIQQAEKNVNPKT-EAVNTSNAAISSSSSNRPK 119


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 393 NHTMKDNNRQFGIFSNDLVDLAHRIYEGKSECVPVFRA 280
           NH  + N R+   +   L D  HRI E   + VP FRA
Sbjct: 140 NHGRRLNTREIR-YKKKLEDERHRIIERAMKMVPGFRA 176


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 190 KIQQLNENVNPVVFEKLTGVDKGIAL 267
           KIQ +N++VNP++   L  ++K I L
Sbjct: 222 KIQDINDSVNPLLNTYLDFIEKDIYL 247


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 379 FHSMVPGIFCAGANLKERLKMSDEEVAKFVRGLRETFIEIEDLP 510
           F S+VPG F    +LKE+  +   +        R +  E+E+LP
Sbjct: 610 FISIVPGTFALPDSLKEKQNLFAIQDISLDEPQRLSLYELEELP 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,275
Number of Sequences: 5004
Number of extensions: 52496
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)