Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l13
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.38 
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    28   0.67 
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   1.6  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   3.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.6  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   3.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   6.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   8.3  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   8.3  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   8.3  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
 Frame = -2

Query: 422 FVFHISHGLIIGR------PFTFRFTIDSLKFFYLEQFLFLRFYGLMSSFES*NISFYNV 261
           FVF  SH L+  +      P+    T     FFY   F F  F        +  I  Y+ 
Sbjct: 43  FVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDS 102

Query: 260 NV--YCCIFWIHTLFPCFSFI 204
           NV  + C F+  +LF  FSF+
Sbjct: 103 NVVPFFCFFFYFSLFSFFSFL 123


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 329 FLFLRFYGLMSSFES*NISFYNVN 258
           F FL+ + + SSF S N + YN+N
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLN 266


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 366 KTKSKRSADDKAMAYMKNKDNKKT 437
           K+K KRSADD +    K+K  KK+
Sbjct: 473 KSKKKRSADDASEEVKKSKKKKKS 496


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 144 NEGKSRIEWLL-SYEYQRMWLDEREAWKKRM-YPENTT 251
           N  +S +E +  S+E  R   DE +AW+KRM Y +N T
Sbjct: 110 NSFRSEVELIAQSFEELRDPNDEWKAWQKRMRYKKNLT 147


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 288  KLKHIVLQCQRLLLYFLDTYAFSMLLFHLTTCVDIHMIATIRYVIYL 148
            K K I+ QC+ ++L  L+   FS +       +++HM+  I   +YL
Sbjct: 1164 KKKVILEQCEYVILDILNFLKFSGIPTQSKKRLEVHMLNFISSTLYL 1210


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -1

Query: 453 CNINETFSYYLCFSYKPWPYHRQTVYFS----FYYRFPQIFLS 337
           C    +F YYLCF +     +R + Y+S     +  +PQ ++S
Sbjct: 156 CEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEKLFEDYPQYYMS 198


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -2

Query: 425 IFVFHISHGLIIGRPFTFRFTIDSLKFFYLEQFLFLRFYGLMS--SFES*NISF-YNVNV 255
           I +F I+H LI+   F   +++     FY+   +F+R + L++   FE   ++F ++  V
Sbjct: 168 ICLFVINHILILLGYFQCSYSVFYASVFYILLGVFIRVFYLVNKEKFEKKELAFLFSSIV 227

Query: 254 YCCIFWIHTL 225
             C+   + L
Sbjct: 228 VACLIQFNVL 237


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 174 LSYEYQRMWLDERE-AWKKRM 233
           L Y +QR+WL+ +E  W +RM
Sbjct: 598 LIYAFQRVWLECKEKVWVRRM 618


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 245 YNSKR*HCKTICFNFQNCSSSHKNAKKETVQDK 343
           +NS R  C    F+  NC S  +N  ++  +DK
Sbjct: 530 FNSHRFPCIFTSFSCYNCISGTRNISRQYSRDK 562


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 82  FSSRYVLCYYLEFCGLHKLRDGMR 11
           F S+ V C  L FC L  L DG+R
Sbjct: 82  FGSKGVSCNSLAFCCLVTLIDGLR 105


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 274 RFTMSTFTVVFSGYIRFFHASLSSNHMR*YSYDSNHSIRDLP 149
           +F    + + FS   R   A L+++++   +   NH++R+LP
Sbjct: 368 QFCQERYHLYFSANGRISMAGLNNSNVEHVAQAFNHAVRELP 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,136
Number of Sequences: 5004
Number of extensions: 35581
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)