Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l13
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0389 + 23055896-23056486,23056957-23057109,23057652-230579...    28   3.6  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    28   3.6  
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530...    27   8.3  
01_01_0049 - 373980-374148,374407-374451,375003-375149,375647-37...    27   8.3  

>11_06_0389 +
           23055896-23056486,23056957-23057109,23057652-23057957,
           23058558-23058995
          Length = 495

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 138 IRNEGKSRIEWLLSY-EYQRMWLDEREAWKKRMYPENTTVNVDIVKRYV 281
           ++ E K R+ W+LSY  +    L    +  KR   EN   +  ++ +YV
Sbjct: 349 LQGEDKERLAWILSYITHLLSLLARNSSMSKRHRKENQATSGPVIPQYV 397


>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 425  IFVFHISHGLIIGRPFTFRFTIDSL---KFFYLEQFLFLRFYGLMS 297
            IF+  + +GLI+     F +T++      FF    F++  FYG+M+
Sbjct: 1281 IFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMA 1326


>06_01_0724 +
           5299278-5299542,5299690-5299950,5300246-5300351,
           5300633-5300697,5300759-5301233,5302239-5302347,
           5302432-5302710,5303025-5303231,5303319-5303468,
           5304164-5304277
          Length = 676

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 61  CYYLEFCGLHKLRD 20
           CYYLEF GLH  R+
Sbjct: 213 CYYLEFGGLHMKRE 226


>01_01_0049 -
           373980-374148,374407-374451,375003-375149,375647-375768,
           375938-376042,376123-376234,376314-376381,376617-376766,
           377471-377533,377616-377741,377841-377963,378206-378387,
           379398-379488
          Length = 500

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -1

Query: 312 LWLDEQF*KLKHIVLQCQRLLLYFLDTY 229
           L++DE   K++++ L CQ++ + +LD +
Sbjct: 425 LFIDENHQKVRYLFLHCQKVRIGYLDIF 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,377,658
Number of Sequences: 37544
Number of extensions: 176981
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)