Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l13
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-4|CAB01963.1|  398|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    28   4.3  
Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U40187-1|AAA81158.3|  459|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    27   9.9  
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    27   9.9  
AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine re...    27   9.9  
AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z79694-4|CAB01963.1|  398|Caenorhabditis elegans Hypothetical
           protein C15A11.4 protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 147 EGKSRI-EWLLSYEYQRMWLDEREAWKKRMYPENTTVNVDIVKRY 278
           E  S+I +W   Y  +   LDE+ A K + +PEN TV+  +  +Y
Sbjct: 17  ESNSKILKWCKKYLLEGQQLDEKHAEKVQNFPENPTVSDFVFIKY 61


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 408 KPWPYHRQTVYFSFYYRFPQIFLS*TVSFFAFLWLDEQF*KLKHIVLQCQRLL 250
           +P P+H  T      Y    +F S T++FF  L  ++   K+  ++   ++++
Sbjct: 750 RPQPFHFTTFIQMIRYTVEAVFASYTIAFFFSLAFEKPLNKIDEMLFNSKKMM 802


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 408 KPWPYHRQTVYFSFYYRFPQIFLS*TVSFFAFLWLDEQF*KLKHIVLQCQRLL 250
           +P P+H  T      Y    +F S T++FF  L  ++   K+  ++   ++++
Sbjct: 750 RPQPFHFTTFIQMIRYTVEAVFASYTIAFFFSLAFEKPLNKIDEMLFNSKKMM 802


>Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical
           protein K02B9.3a protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 264 CQRLLLYFLDTYAFSMLLFHLTTCVDIHMIATIRYVIYLHFLL 136
           C  +L+ F+DT+ F   L +L   +  + I  + +++   FL+
Sbjct: 6   CFGILISFMDTFGFIATLLYLMVAIKCNGIFYVPHLVRYFFLI 48


>U40187-1|AAA81158.3|  459|Caenorhabditis elegans Hypothetical
           protein F11H8.2 protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 126 HFKIIRNEGKSRIEWLLSYEYQRMWLDEREAWKKRMYPENTTVNVDIVK 272
           H   I    +  +++ L    +++W D R AW+  +  ++ T+ +D+VK
Sbjct: 82  HVTTISAVSEVSMDYTLDLYLRQIWKDPRLAWESDV-EDSLTIGIDMVK 129


>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -1

Query: 399 PYHRQTVYFSFYYRFPQIFLS*TVSFFAFLWLDEQF*KLKHIVLQCQRLLLYFLDTYAFS 220
           P  +Q +YF+    F  +  + T  FF  L   ++F   KHI L C  L L ++     S
Sbjct: 256 PDRKQWMYFNL---FTTVEYAKTFMFFHRLDSRDKFILTKHITLSCMNLHLSYISVARKS 312

Query: 219 MLL 211
            +L
Sbjct: 313 EVL 315


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -1

Query: 399 PYHRQTVYFSFYYRFPQIFLS*TVSFFAFLWLDEQF*KLKHIVLQCQRLLLYFLDTYAFS 220
           P  +Q +YF+    F  +  + T  FF  L   ++F   KHI L C  L L ++     S
Sbjct: 256 PDRKQWMYFNL---FTTVEYAKTFMFFHRLDSRDKFILTKHITLSCMNLHLSYISVARKS 312

Query: 219 MLL 211
            +L
Sbjct: 313 EVL 315


>AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform b protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 257 R*HCKTI-CFNFQNCSSSHKNAKKETV 334
           R  CK + CFNF   S+++ NAK+E V
Sbjct: 307 RKRCKELLCFNFPIKSAANSNAKEEIV 333


>AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical
           protein F28B3.5a protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 225 FSMLLFHLTTCVDIHMIATIRYVIYLHFL 139
           +S++LF L  CV +H IA +  +I   F+
Sbjct: 342 YSIMLFMLIDCVTVHTIAPLFNIIISDFV 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,899,643
Number of Sequences: 27780
Number of extensions: 192701
Number of successful extensions: 525
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)