Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l05
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    30   0.34 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.2  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   4.2  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    26   4.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.5  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   7.3  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.7  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = -3

Query: 486 PNVPR*SGDIHLVITSYYQTTLHYRWVGSSFTRPGTSFLLFENVYGKQQDINEEMAEPGV 307
           PN+    G  H  + S+  +T       S      T F    + Y    D+N  + +  +
Sbjct: 48  PNIQPLQG--HSPVPSF-MSTASTNISSSKINNNQTEFEQLRDSYKSHGDLNSAINDSRI 104

Query: 306 HSLILGSSRKMERSEEPTSGMDW 238
            S+I   +++ E+   P S +DW
Sbjct: 105 QSIIFELNQQCEKESIPVSNIDW 127


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 398  LSHVRALLFYCSKMFM 351
            L  VRALLFYCS +F+
Sbjct: 1015 LYFVRALLFYCSSIFI 1030


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 147 KTFGNTEIIGVLLRTLFCALRWRPTSHPFHSSPFQKSAPRSSPFS 281
           KTF + ++  + L+        RP  H FHS+P     P  +P S
Sbjct: 173 KTFASKQLPTLPLQKSSKLSNRRPALHSFHSAPANSLYPLPTPTS 217


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 573 VEIRRLQASCEPTRVGRCPAVFISTEILIPNVPR*SGDIHLVITSYYQTTLHYRWVGSSF 394
           ++  RL+   E   +G    VF+S  + IP  P     +H +IT    T   YR+    +
Sbjct: 405 MDFDRLRFIAERADLGLNKEVFLS--VTIPERPGSFEALHNIITPRSITEFSYRYDNDDY 462

Query: 393 TRPGTSFLL 367
               TSF++
Sbjct: 463 ANIYTSFVV 471


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 178  TPMISVFPKVFQRKTLSQK*HTIHRLHKHIIYFKMFYPHPRKSKILV 38
            +P++S   +V  RKT  Q    I RL  HII+        + SK++V
Sbjct: 1795 SPLLSSHVEVIMRKTFLQLLSEIKRLGAHIIHASANKILIKTSKLIV 1841


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 411 WVGSSFTRPGTSFLLFENVYGKQQDINEEMAEPGVHS---LILGSSR 280
           W GS  + PG    + +++  KQ+ IN      G  S   L++G+ R
Sbjct: 402 WTGSKISSPGLEVNVLQDIEDKQKIINIMAQIDGYESDQILVVGAPR 448


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -2

Query: 322 GGAGSSFINSRIF*ENGEERGADFWNGLEWNGCDVGLHLRAQ 197
           GG G     +R+F  +  ER    W  LEW   D  L L  Q
Sbjct: 464 GGHGGYVRRARVFELDPVERAVRTWKRLEWPPEDRKLMLDVQ 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,486
Number of Sequences: 5004
Number of extensions: 69726
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)