Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l05
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0523 + 3837452-3837512,3837923-3838060,3838196-3838236,383...    29   3.3  
01_06_1525 + 37988037-37988237,37988315-37988410,37988508-379886...    29   4.3  
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    28   5.7  
06_01_0361 - 2583296-2583652,2584269-2584461,2584725-2584978           28   5.7  
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388...    28   7.6  

>01_01_0523 +
           3837452-3837512,3837923-3838060,3838196-3838236,
           3839095-3839172,3842040-3842115,3842921-3843081,
           3843221-3843320,3843416-3843482,3843974-3844088,
           3844156-3844221
          Length = 300

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
 Frame = -3

Query: 456 HLVITSYYQTTLHYRWVGSSFTRPGTSFLLF--ENVYGK-QQDINEEMAEPGVHSLILGS 286
           +++ +SY     HY W+G    +   S  +   + ++G+   D + E A   +      S
Sbjct: 73  YVIFSSYQTARYHYPWLGEELEKGMASLQVHKQKGIHGEVGVDRSHERARE-IEPRAESS 131

Query: 285 SRKMERSEEPTSGMDWNGTGVMSASILGRKIMSLIVHR*FQCSQKSS 145
           S +  R+  P  G D  G+G  S++   R       H+ FQ + KSS
Sbjct: 132 SIQQFRNYSPGLGGDSRGSGDSSST---RVAADPDTHQDFQPTSKSS 175


>01_06_1525 +
           37988037-37988237,37988315-37988410,37988508-37988620,
           37988739-37988805,37988891-37988983,37989095-37989238,
           37989681-37989769,37989912-37990017,37990224-37990311,
           37990395-37990513,37990786-37990950,37991222-37991406,
           37991568-37991668,37991960-37992069,37992287-37992394,
           37992596-37992706,37992791-37993002,37993087-37993423,
           37993593-37993619,37993767-37993877
          Length = 860

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 637 RLVSLGNPFTDTRSRGYQTGLCRNPTSPSVL 545
           + VS GNP    RS  YQ G C +P S SV+
Sbjct: 785 KFVSFGNPSGTCRS--YQQGSCHHPNSISVV 813


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 256 DFWNGLEWNGCDVGLH 209
           D W+ LEW+G D G H
Sbjct: 950 DVWDALEWDGVDAGHH 965


>06_01_0361 - 2583296-2583652,2584269-2584461,2584725-2584978
          Length = 267

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 173 DDFSVPKSLPKKNIITKITHN 111
           DD  +PK L KKN++T+   N
Sbjct: 238 DDLDIPKPLAKKNMVTEAAQN 258


>09_02_0071 -
           3877231-3877807,3880716-3880722,3880723-3881000,
           3881287-3883916
          Length = 1163

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 322 GGAGSSFINSRIF*ENGEERGADFWNGL 239
           GG G      R+F E G ER A  WNGL
Sbjct: 146 GGFGFMDDARRVFDEAGSERNAVSWNGL 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,357,421
Number of Sequences: 37544
Number of extensions: 464561
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)