Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l03
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    29   0.87 
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    27   3.5  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   6.1  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    26   6.1  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    25   8.1  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 239 NYKILIFLTVLVGLCLIYFQNSGVYHNKYLPLPREA 346
           N+K L+FL   V +C++       Y NKY  LP EA
Sbjct: 63  NFKSLLFL-FFVSICVVILVVRYRYLNKYARLPHEA 97


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 394 IDNIFVQLKAVTHFFHCL-SW*RKVFVMINATVLKINQTQTH 272
           +DN+ + +  ++HF+ CL S+   V  +   TV  I Q + H
Sbjct: 120 VDNVPLHISVISHFYPCLQSYNTDVIGITTDTVENICQWKAH 161


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 16/146 (10%)
 Frame = +2

Query: 53  LKNPYFKNVID---SITHLLKCVQFYPEKIDYNSTI------------LFLQLNXXXXXX 187
           L+N   +NV      +  L+KC QF  E+ID +  I            LF  +N      
Sbjct: 145 LENGLLRNVEGIQAQLRRLIKC-QFVAEEIDNDIAITAFRLLVGDLLVLFKAVNIGVINV 203

Query: 188 XXXXXXXGHHNFFLSVRNYKILIFLTVLVGLCLIYFQNSGVYHNKYLPLPREAMEKVSYS 367
                  GHH+   S+R YK  +  T  + +  +    S  +  K+ P+P      +S +
Sbjct: 204 LEHYFEMGHHDAAQSLRIYKTFVNQTEDI-INYLSTARSLEFVTKF-PVPNIKHAPISLT 261

Query: 368 LQLHKYIID-QYYDYRKDLKTSNLGS 442
             L +Y+ D  + + RK    +  GS
Sbjct: 262 ASLEEYLNDPDFEENRKQYLQNKSGS 287


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 371 QLHKYIIDQYYDYRKDLKT-SNLGSILFKRNDKNTLLVEK 487
           +L  Y+ID+Y  YR  LK+  N+ S +    +K   L+++
Sbjct: 113 ELENYLIDRYDQYRMTLKSIRNIESSVQPSREKKQKLLDQ 152


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 262 NCLSGFVFDLFSKQWRLS*QIPSVTTRG 345
           +CL+   + +F   WRL   IPS+   G
Sbjct: 67  SCLTSGTYQMFGDTWRLDEAIPSLKEFG 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,926
Number of Sequences: 5004
Number of extensions: 63866
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)