Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l03
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-8|AAF99957.2|  434|Caenorhabditis elegans Acetylcholine r...    32   0.47 
AY519852-1|AAR89633.1|  434|Caenorhabditis elegans acetylcholine...    32   0.47 
AF099914-1|AAC68761.1|  285|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF025450-3|AAB70932.1|  331|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U28735-8|AAF99957.2|  434|Caenorhabditis elegans Acetylcholine
           receptor protein 22 protein.
          Length = 434

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +2

Query: 242 YKILIFLTVLVGLCLIYFQNSGVYHNKYLPLPREAMEKVSYSLQLHKYIIDQYYDYRKDL 421
           YKI   L++ +   L++F       NK +    +  E+     +L K+++D YY Y + +
Sbjct: 3   YKISYLLSISI---LLFFAKCEKVKNKAVEKKDDRNER-----ELAKHLLDDYYQYTRPV 54

Query: 422 KT-SNLGSILFKRNDKNTLLV-EKNRKFTVLIWRHWEW 529
           +  S++ ++  +    N + V E+N +  +L+W    W
Sbjct: 55  RNYSSVLNVTVQPQIYNLVEVNEQNEQIKILLWFPQSW 92


>AY519852-1|AAR89633.1|  434|Caenorhabditis elegans acetylcholine
           receptor (51.1 kD)(acr-22) protein.
          Length = 434

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +2

Query: 242 YKILIFLTVLVGLCLIYFQNSGVYHNKYLPLPREAMEKVSYSLQLHKYIIDQYYDYRKDL 421
           YKI   L++ +   L++F       NK +    +  E+     +L K+++D YY Y + +
Sbjct: 3   YKISYLLSISI---LLFFAKCEKVKNKAVEKKDDRNER-----ELAKHLLDDYYQYTRPV 54

Query: 422 KT-SNLGSILFKRNDKNTLLV-EKNRKFTVLIWRHWEW 529
           +  S++ ++  +    N + V E+N +  +L+W    W
Sbjct: 55  RNYSSVLNVTVQPQIYNLVEVNEQNEQIKILLWFPQSW 92


>AF099914-1|AAC68761.1|  285|Caenorhabditis elegans Hypothetical
           protein C40A11.5 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 317 NKYLPLPREAMEKVSYSLQLHKYIIDQYYDYRKDLKTS 430
           NK  P P++  EK+++   + K I+    D+ K++KT+
Sbjct: 238 NKRKPKPKQPKEKITHQSLMDK-IVKMLEDFNKNMKTA 274


>AF025450-3|AAB70932.1|  331|Caenorhabditis elegans Hypothetical
           protein C41H7.4 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 521 WEWLKYRHIFRYSSTPHNPLEDCSVNNCEFTGNNRLLDKVDAVVVHLQKGVLPN 682
           W W  YRH   Y  T      + ++   E+TG +++ D+ D +   +  G L N
Sbjct: 129 WYWEYYRHFLYYRETLGQ--FEANLRGEEWTGEDQIQDEDDIIYDGMLDGDLSN 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,445
Number of Sequences: 27780
Number of extensions: 344320
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)