Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22l01
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    30   0.25 
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    30   0.33 
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   1.0  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    28   1.0  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    28   1.3  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   1.8  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    27   1.8  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.1  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.1  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    25   7.1  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   9.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   9.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   9.4  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 28/101 (27%), Positives = 46/101 (45%)
 Frame = -2

Query: 591 SPLSSITFLGAVTVKIPSVDSSETTLAVSAPSGKEYLRTNCLDTYPCSSCFSSCLASTTT 412
           S  S+ T +   +V  P+V SSET  +VS  S +    ++ +D    ++  S+   ST+ 
Sbjct: 193 SSSSTNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSE 252

Query: 411 *PSAVFTDISSGEKCWTSKLIWNLSFSVLIVEPRSRAKDAV 289
              +  TDI +     +S      S S  +VE  S   D+V
Sbjct: 253 ATVSFSTDIPATPSTLSSPA---SSSSSYLVETSSTLTDSV 290


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +2

Query: 311  LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEHGYVSRQFVRKY- 487
            +G T + E D+F  N  V +F P+  + +          K +E+ DEH     Q V +  
Sbjct: 1048 IGETSRKELDQFLRNSKVNNFDPNAEAQRHLSYQARYRLKKQERLDEHKEEQEQLVTELL 1107

Query: 488  -SLPEGADTAN 517
              LPE     N
Sbjct: 1108 GYLPEPPSKPN 1118


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 437 EKQDEHGYVSRQFVRKYSLPEGADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITKT 616
           E Q    Y+ RQF   Y+     ++++++ EL  + I T T     ++    + +P+T+ 
Sbjct: 123 EVQSTIEYIMRQF---YAYVSSQESSHIIYELLKNAISTTTLVLSDLNHFRSKKIPLTEF 179

Query: 617 GPVRKESAESK 649
                ESA SK
Sbjct: 180 ALRYPESAVSK 190


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 494 PEGADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITKTGPVRKESAE 643
           P G     V  E+  +G+LTV+A  K    K E++V     G + +E  E
Sbjct: 495 PRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIE 544


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 500 GADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITK 613
           G D + + S+++ D  L +   RK+ D++ E++  ++K
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSK 489


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 464 SRQFVRKYSLPEGADTANVVSELSTDGILTVTAPRK 571
           S + +R Y +P  AD  N++ E+S  G   + +  K
Sbjct: 113 SAKSIRSYIIPTNADPQNIIYEISQSGYYCIWSHSK 148


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 609 VIGTTLSPLSSITFLGAVTVKIPSVD 532
           ++GT L PL+ +T L  + VK+P  D
Sbjct: 561 ILGTILIPLNLVTGLWGMNVKVPGQD 586


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 152 EECPCKKQRDNKLVDQDFGMPLTPDD 229
           EE   KK +D ++VD  FG+ L+ DD
Sbjct: 338 EEEERKKGKDGQIVDAGFGLVLSKDD 363


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -2

Query: 642 SADSLRTGPVLVIGTTLSPLSSITFLGAVTVKIPSVDSSETTLAVSAPS-GKEYLRTNCL 466
           + D+  + P++   T  S  SS +  G+ +  +PS  +S TT     P+ G   L T   
Sbjct: 78  TTDTSASTPIITEST--SSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPIT 135

Query: 465 DTYPCSSCFSSCLASTTT*PSAVFTD 388
            T P +S  S+ +    T  S+  T+
Sbjct: 136 PTVPPTSTSSTSIPIPPTSTSSTDTN 161


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 311 LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEA 427
           L S+I+ EK +    LD++ +SP+E+   +   Y + EA
Sbjct: 475 LKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWYPIPEA 513


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 426 LSTRKNRTST--DTCLGSLCASTPYQKGLTQLTLSPSYPLTEF 548
           L T +NRT+T    C  S    +PY  GLT   L   YP  E+
Sbjct: 634 LYTNQNRTTTLDYQCSSSNSVVSPYASGLTLKNL--IYPFEEY 674


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 588 PLSSITFLGAVTVKIPSVDSSETTLAVSAPSGKEYLRTNCLDT--YPCSSCFSSCL 427
           P++  +   ++  ++ SV +S      ++PS  EYL   CL T    CSS  ++ L
Sbjct: 203 PIADTSIKDSIKKRVVSVLTSRVIEIDNSPSFPEYLSFRCLRTVALACSSYAANVL 258


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 168 LQGHSSSATTILINSN 121
           L+GHSSS T++L ++N
Sbjct: 10  LRGHSSSVTSVLFDAN 25


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 646 RLCRFLANRASFSDRNNSFS 587
           R+ RFLAN+ S + R ++FS
Sbjct: 370 RISRFLANKCSIASRIDNFS 389


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 488 SLPEGADTANVVSELSTDGILTVTAPRKVIDDK 586
           SLPE   T  ++ + + + ++TVT  ++ +  K
Sbjct: 598 SLPEWCGTETIIRQFAMNLVMTVTNDKQAVSSK 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,990
Number of Sequences: 5004
Number of extensions: 52342
Number of successful extensions: 178
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)