Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22k23
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 118 3e-27
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 81 1e-15
09_04_0569 + 18600750-18602117 33 0.20
06_01_1138 - 9429447-9433868 31 0.60
09_02_0140 + 4879319-4879968,4881443-4881942,4884230-4884368,488... 31 0.79
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 31 0.79
09_02_0261 - 6390672-6391112 29 2.4
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 4.2
01_07_0065 - 40851101-40851247,40851352-40851495,40851781-408518... 29 4.2
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 28 7.4
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159... 27 9.7
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 118 bits (285), Expect = 3e-27
Identities = 52/93 (55%), Positives = 67/93 (72%)
Frame = +2
Query: 134 FFALLVRWCVAAYPYSGYRKPPMYGDFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMD 313
F ALL+R V+ PYSG P +GD+EAQRHW E+T+H P + WY NT+ NDL YWG+D
Sbjct: 144 FAALLLRVLVSVGPYSGQGVAPKFGDYEAQRHWMELTLHLPSSDWYRNTSANDLAYWGLD 203
Query: 314 YPPLSAYHSLLMGLVADWLDPESVRLFASRGYE 412
YPPLSAY S L GL+ + P++V L +SRG+E
Sbjct: 204 YPPLSAYQSRLHGLLLNASLPDAVALRSSRGFE 236
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 80.6 bits (190), Expect = 1e-15
Identities = 50/146 (34%), Positives = 69/146 (47%)
Frame = +2
Query: 209 DFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPPLSAYHSLLMGLVADWLDPESVR 388
DF+ R+W +T P WY + + W +DYPP AY S L+ L A +D V
Sbjct: 35 DFDVHRYWLALTHALPARRWYTDASSQ----WTLDYPPFFAYFSRLLALPAPLVDASLVS 90
Query: 389 LFASRGYEDDSHKTFMRWTVFLSDLYFYATAVLCICIDAERVRAKETKWVFKRTDLSTIL 568
L ++ ++R TV SDL ++VL + DA R +R LS L
Sbjct: 91 LPVPDAPPSFAYLLYLRLTVAFSDLLLLLSSVLLLATDALTRRR-------RRPFLSLAL 143
Query: 569 FLLYPGLILIDHGHFQYNCVSLGLFL 646
L P L+ +DH HFQYN +GL L
Sbjct: 144 VLWSPALLAVDHVHFQYNGFLMGLLL 169
>09_04_0569 + 18600750-18602117
Length = 455
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 446 PSNA*MFCESHLRSLLTRRASRIPDPASPQRGPSTSYDTLITEDSPCPNIQGH 288
P N + + H+ +L SR+ P SP STS + SP P +QGH
Sbjct: 156 PENVLLRADGHV-TLTDFDLSRLLPPVSPSASTSTSSSSCSATSSPPPQLQGH 207
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 224 SELRSLHTSVVYDIQNTDMRQHTNEQVM 141
SE+ +LH V DIQ T M +HT VM
Sbjct: 928 SEINNLHELEVLDIQQTKMPEHTTRDVM 955
>09_02_0140 +
4879319-4879968,4881443-4881942,4884230-4884368,
4886005-4886156,4886267-4886532,4886902-4887028,
4887111-4887179,4887270-4887518,4887636-4888012
Length = 842
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 50 KIYSNVTMTKRADPDRFTVTKDALLPGIFFALLVRWCVAAYPYSGYRKPPMYGDFEAQRH 229
+I+ NV R T +L+PG+ + LVR Y G R+PP++ +
Sbjct: 82 RIFDNVRSFPAGAAPRSCYTLRSLVPGLKY--LVRASFMYGNYDGLRRPPVFDLYAGVNF 139
Query: 230 WQEITV 247
W+ + +
Sbjct: 140 WRTVNI 145
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 313 VHAPIFKVILRRVMIPRCYRCVNSNLLPMSLSFEVSIHRWFTISRIRICGNTPTNK*C 140
VH PI +V V I R L + + + HR ++ +++CG+TPT C
Sbjct: 142 VHTPITQVSFEAVGISRNTEFFADILQRLGANSMIKKHRKESMRMMKVCGHTPTGTGC 199
>09_02_0261 - 6390672-6391112
Length = 146
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Frame = -3
Query: 482 LLSHRNTNHSGIPSNA*MFCESHLRSLLTRRASRIPDPASP----QRGPST-SYDT---L 327
+ SH NT+HS +P N +F + L S L RR + +P+ A +RG + +Y+ L
Sbjct: 1 MASHPNTHHSTLPDNYDLF--AALASNLDRRDADLPNLADKVHKLKRGMTMHAYNNAALL 58
Query: 326 ITEDSPCPNIQGHFASCYDTTLL 258
T C ++ H DTT++
Sbjct: 59 TTIRVDCWIMEQHLVDLIDTTVV 81
>08_02_1442 + 27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -1
Query: 286 LRRVMIPRCYRCVNSNLLPMSLSFEVSIHRWFTISRIRICGNTPTNK*CEKYTRQKRIFR 107
L+R++I RC RC + + +S S E + T S I +C N N + + + K +
Sbjct: 994 LKRLIIERCPRCKDIPTVWLSASLEYLSLSYMT-SLISLCKNIDGNTPVQLFPKLKELIL 1052
Query: 106 YRKP 95
+ P
Sbjct: 1053 FVLP 1056
>01_07_0065 -
40851101-40851247,40851352-40851495,40851781-40851872,
40851954-40852035,40852127-40852193,40852284-40852375,
40852470-40852586,40852764-40852881,40852969-40853161,
40853258-40853339,40853607-40853744,40853829-40854023
Length = 488
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 266 WYHNTTQNDLEYWGMDYPPLSAYHSLLMGLV 358
WY+ T N L YW + + +HS +G++
Sbjct: 431 WYYEGTNNTLVYWVRKHVFVKVWHSTRVGIL 461
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 267 GIITRRKMTLN-IGAWTILRYQRII 338
GI R K+TLN + AWT++ Y+R++
Sbjct: 132 GINRRFKLTLNKLYAWTLVDYERVV 156
>06_01_0209 +
1587656-1587876,1587964-1588055,1590520-1590545,
1591130-1591370,1591459-1591554,1591639-1591754,
1591837-1591917,1592597-1592720,1593222-1593271,
1593735-1593825,1594386-1594421,1594502-1594602,
1594684-1594800
Length = 463
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 452 GIPSNA*MFCESHLRSLLTRRASRIPDP-ASPQRGPSTSYDTLITE 318
G+P +A + LR +L +A+R+PD +S +RG Y I +
Sbjct: 43 GLPDDAAAHYRNALRVMLEAKAARVPDAVSSSERGQVRVYQEKIAK 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,020
Number of Sequences: 37544
Number of extensions: 388099
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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