Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k21
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    35   0.012
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    34   0.016
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    34   0.021
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    28   1.1  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   4.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.5  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   9.9  

>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 70  EWYTPAEVAVHNKATDCWVSINGKVLDLTSWLQD 171
           +++ P E+  HN + D ++ INGKV D++++  D
Sbjct: 4   KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADD 37


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 25  QKISIKDNPMKYTKQEWYTPAEVAVHNKATDCWVSINGKVLDLTSWL 165
           Q +S  + P+  TK+E      +A H    DCW++I GKV +++++L
Sbjct: 63  QNLSGVEKPIPVTKEE------LAKHKTKEDCWIAIRGKVYNVSAYL 103


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 79  TPAEVAVHNKATDCWVSINGKVLDLTSWL 165
           T  E+A H    DCW++I GKV ++T++L
Sbjct: 73  TAEELAKHCSPDDCWMAIRGKVYNVTAYL 101


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 654 FVSYKCQDKASEWKVVHF 601
           FV + CQD   +WK +H+
Sbjct: 399 FVKFHCQDDIEDWKAIHW 416


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = -2

Query: 323 ISKEVFRRILFLSQYGNPRLKQGQVSTQSSSQYQFLILHEHALMHLQTLNSSC 165
           +S+E+ + +L   +   P+L + ++S  S  QY   ILH+  L+  ++ +S+C
Sbjct: 688 LSQEILKGLL---EKDTPQLLETEISGSSGFQYILFILHQ--LLDKESDDSAC 735


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 491  CHFSGFLQLLMIIKNYLFTFF 553
            CH+S  ++LL IIK+  + FF
Sbjct: 1083 CHYSECVKLLEIIKSEYYLFF 1103


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 535 LPFYF-FLMHWMNYNFKTEKCLSEVYYFPLTCFV 633
           +P++F F + +++ N    +C++    FP+T F+
Sbjct: 293 IPYFFAFFVSFISNNVTKWRCMAVALEFPITLFL 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,094
Number of Sequences: 5004
Number of extensions: 46396
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)