Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k21
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0065 + 461182-461271,462222-462288,462408-462664                 41   0.001
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529           38   0.010
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592     38   0.010
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478     35   0.051
09_02_0530 + 10285844-10287217                                         32   0.36 
08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931...    28   7.8  

>05_01_0065 + 461182-461271,462222-462288,462408-462664
          Length = 137

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 52  MKYTKQEWYTPAEVAVHNKATDCWVSINGKVLDLTSWLQD 171
           M    ++ YT  EVA HN   DCW+ I GKV +++ +L+D
Sbjct: 1   MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLED 40


>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
          Length = 150

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 76  YTPAEVAVHNKATDCWVSINGKVLDLTSWLQD 171
           ++ ++V  H    DCWV I+GKV D+T +L+D
Sbjct: 13  FSASDVVGHASRKDCWVVIHGKVYDVTKFLED 44


>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
          Length = 135

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 79  TPAEVAVHNKATDCWVSINGKVLDLTSWLQD 171
           T  EV+ HN   DCW+ I GKV ++T +L+D
Sbjct: 8   TLEEVSKHNTKDDCWLIIGGKVYNVTKFLED 38


>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
          Length = 138

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 76  YTPAEVAVHNKATDCWVSINGKVLDLTSWLQD 171
           Y+  EV+ HN   DCW+ I GKV D++ ++++
Sbjct: 8   YSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEE 39


>09_02_0530 + 10285844-10287217
          Length = 457

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 88  EVAVHNKATDCWVSINGKVLDLTSWL 165
           E+  H    D W+SI+G V D+T+W+
Sbjct: 23  ELRAHASRDDLWISISGDVYDVTAWV 48


>08_01_0996 +
           10089800-10090149,10090426-10090483,10092922-10093126,
           10093201-10093280,10093377-10093477,10093566-10093691,
           10094099-10094101,10094736-10094763,10094875-10094961,
           10095187-10095273,10095346-10095411,10095511-10095603,
           10095688-10095744,10095834-10095959,10096049-10096139,
           10096233-10096321,10096951-10097141,10097224-10097322,
           10098814-10098829
          Length = 650

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = -2

Query: 320 SKEVFRRILFLS--QYGNPRLKQGQVSTQSSSQYQFLILHEHALMHLQTLNSS-----CN 162
           SK + R+ L L   +YG+   + GQ+  +  S    LI  ++AL+   + +SS     CN
Sbjct: 118 SKHIERKQLHLRIPRYGSQLRRFGQLHAERHSSTNRLIKQQNALVLCSSASSSMSTLCCN 177

Query: 161 QEVKSKTFPLMETQQS 114
           +E+     P +E  +S
Sbjct: 178 REIGRYVSPSVEILRS 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,781
Number of Sequences: 37544
Number of extensions: 265436
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)