Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22k18
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 29 0.48
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 27 2.6
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 2.6
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 2.6
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 2.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.6
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.4
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 26 5.9
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 7.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 7.9
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 485 VYTGGSWSIWLATREGAWGWLADSFTHYFRMALV 586
+YT W ++L +E W ++ F HYF ALV
Sbjct: 453 IYTWWGW-LYLDLKERRWLYVYACFAHYFSFALV 485
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 516 WQLAKALGAGWQIHSRTILEWLSCIWGYQGG 608
W L KA GAG IH++T L + W G
Sbjct: 227 WALVKAHGAGDAIHAKTQLSTWNHGWAVTAG 257
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 242 SSGSTAECLCSQLDSATLSQGARRSTLTLQIRGSDSSSLVTPKV 111
+S ST SQ+ S +++ R+S I SDS SL TPK+
Sbjct: 295 ASPSTVIDQSSQVSSIFVNKRLRKSVNNQAISRSDSLSLDTPKI 338
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 16 YCHLILLLQSIFTLNM-SFCVDLVSED-SFYENITLGVTKLLESDPRICN 159
YC+L L LQS FTL S V+++ E S I +T L+E++ ++ +
Sbjct: 523 YCYLPLDLQSSFTLEFASILVNVLYEQVSLRSVICNSLTALVETNSKVAD 572
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 361 ITERSFRLFNDTTKHWSETCFKYEK 435
+ E++FRLF++ H C +YE+
Sbjct: 280 VYEKTFRLFSEKISHNPTQCLRYER 304
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 389 MTRQNTGPRPVLNTKSKVFELDICRYIGKVCL 484
M ++N + + ++F+LDIC Y G + L
Sbjct: 857 MNKRNAISHTYMQIQEQLFQLDICEYSGDIFL 888
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 222 MSLFPIRQCYSITRCTTFHAYITN 151
M L PI Y ++ CT FH Y+T+
Sbjct: 159 MELLPIT--YDLSFCTVFHGYLTS 180
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +2
Query: 479 CLVYTGGSWSIWLATREGAWGWLADSF----THYFRMALVHLGL 598
C + +G WS+ + + E GW DS T+ +A+ +LG+
Sbjct: 164 CGIESGSHWSLLVVSVEKGLGWYYDSMSNGNTNDCNLAIKNLGI 207
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 358 VITERSFRLFNDTTKHWSETCFKYE 432
+ITE + ++ D K + E C KY+
Sbjct: 380 IITEATLKIVKDRRKKFLELCVKYD 404
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 367 ERSFRLFNDTT 399
ERSFRLFND+T
Sbjct: 449 ERSFRLFNDST 459
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 671 VLVTXKVVQPMGSLAN*RKLPATLVAPDAREPF*NSA*MNLPTSPK 534
+ T + Q +LA+ K P+T+ AP R+ S+ ++L SP+
Sbjct: 182 ISATTSLAQSSPNLASLSKQPSTVHAPSTRQRDLKSSILSLYASPR 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,470
Number of Sequences: 5004
Number of extensions: 55205
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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