Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k18
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0209 + 15550558-15550746                                         28   6.1  
07_03_1388 - 26207091-26207104,26207315-26207653,26208429-26208495     28   6.1  
03_03_0029 - 13900912-13901457,13901574-13901709,13901961-139021...    28   8.1  

>12_02_0209 + 15550558-15550746
          Length = 62

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 503 WSIWLATREGAWGWL 547
           W  W+  R GAWGW+
Sbjct: 43  WRRWIRWRGGAWGWI 57


>07_03_1388 - 26207091-26207104,26207315-26207653,26208429-26208495
          Length = 139

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 248 LRSSGSTAECLCSQLDSATLSQGARRSTLT 159
           L SSG  AE +  Q+  AT  +G RRS  T
Sbjct: 26  LESSGGQAEAIGPQISPATEGEGKRRSLAT 55


>03_03_0029 -
           13900912-13901457,13901574-13901709,13901961-13902179,
           13902429-13902801,13903215-13903458
          Length = 505

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 196 ALSNWEQRHSAVLPEDLRNFY 258
           A+  W++   ++LPE LRNFY
Sbjct: 276 AVQRWDKSAVSILPEYLRNFY 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,073
Number of Sequences: 37544
Number of extensions: 367076
Number of successful extensions: 836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)