Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22k17
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.70
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 2.1
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 27 2.8
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 26 4.9
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 4.9
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 26 4.9
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 6.5
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 8.6
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = +2
Query: 65 GTELDQYLEPRPVPNYHELQPRYGTHTL-----THHVPPPLYGPVPSHLHPPCIDC 217
G Y P P NY+ +P Y T + + PPP P S+ +PP C
Sbjct: 88 GNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSYAPPPSGRPRISYPYPPGYMC 143
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 47 MDGPPDGTELDQYLEPRPV---PNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
M PP E +++ P P+ P H P H PPP++ H+ PP
Sbjct: 220 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 47 MDGPPDGTELDQYLEPRPV---PNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
M PP E +++ P P+ P H P H PPP++ H+ PP
Sbjct: 233 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 47 MDGPPDGTELDQYLEPRPV---PNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
M PP E +++ P P+ P H P H PPP++ H+ PP
Sbjct: 246 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 47 MDGPPDGTELDQYLEPRPV---PNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
M PP E +++ P P+ P H P H PPP++ H+ PP
Sbjct: 259 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 47 MDGPPDGTELDQYLEPRPV---PNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
M PP E +++ P P+ P H P H PPP++ H+ PP
Sbjct: 272 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 47 MDGPPDGTELDQYLEPRPV---PNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
M PP E +++ P P+ P H P H PPP++ H+ PP
Sbjct: 285 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 47 MDGPPDGTELDQYLEPRPV---PNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
M PP + +++ P P+ P H P H PPP++ H+ PP
Sbjct: 207 MPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 49 GRPTGRYRIRPVPRAQTGAKLPRATTSIRNAYTNAPRT 162
G PTG P + G + TTS N TNAP++
Sbjct: 51 GGPTGSSSAPPFGNSIFGKTQQQPTTSFSNTTTNAPQS 88
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 146 VYAFRIEVVARGNLAPVWARGTGLIRYRPVGRPLVKQRIF 27
VY F E + + A VW T L Y P+ L++ RIF
Sbjct: 139 VYGFYDECLRKYGSANVWKHFTNLFDYFPL-TALIEDRIF 177
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 83 TGLIRYRPVGRPLVKQRIFPACPRNLC 3
T +RY + RP+++QR AC LC
Sbjct: 14 TKAVRYHTLLRPILQQRFLRACFALLC 40
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 242 LRGDQRNVGNQYRAGGDGTVPDRIEVAVRGALVYAFRIEVVARGNLAPVWARGTGLIR 69
L D R+ GN + + +RI A Y F V++ N+ PVWA+ +I+
Sbjct: 93 LASDGRSSGNMAPETFNQCIENRINYAKHHN--YGFEYVNVSQMNIPPVWAKMPAIIQ 148
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = -1
Query: 180 GPYRGGGTWCVSVCVPYRGCSSW*FGTG---LGSRYWSNSVP 64
GPY G V +C +W GTG LG Y + +P
Sbjct: 179 GPYYSSGFKAVKLCCSEESVRAWPGGTGHYKLGGNYAPSVLP 220
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 92 PRPVPNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHP-PCI 211
P VPNY QP Y + L P Y + S L P PC+
Sbjct: 265 PTTVPNYPFQQPSYNPNALV-----PSYTTLVSQLPPSPCL 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,946
Number of Sequences: 5004
Number of extensions: 68729
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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