Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22k17
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0359 - 2731522-2732346 33 0.31
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 32 0.55
07_03_0354 - 17109041-17109289,17109423-17109555,17110560-171107... 31 0.73
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 31 0.96
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612... 31 0.96
10_08_0800 + 20660654-20660780,20660909-20661018,20661136-206613... 31 1.3
06_03_1310 + 29238644-29240260 31 1.3
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 28 6.8
04_03_0904 + 20717005-20718087 28 6.8
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202 28 6.8
11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887 28 9.0
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 28 9.0
04_03_1022 - 21778315-21779007 28 9.0
01_06_0883 + 32708037-32708558,32708627-32708911,32709661-32709675 28 9.0
>11_01_0359 - 2731522-2732346
Length = 274
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Frame = +2
Query: 83 YLEPRPVPNYHELQPRYGTHTLTHH----VPPPLYGPVPSHLHPP 205
Y P P P+ H P H HH PPP + P P H PP
Sbjct: 39 YPYPAPPPHSHSHPPPPPPHAYHHHHYPPPPPPHHHPYPPHPPPP 83
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 PRPVPNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP-CIDCPHYVDHP 238
P P +H P + H HH PP + P H HPP PH+ HP
Sbjct: 34 PHHHPPHHHPHPPH--HHPPHHPHPPHHPHPPHHPHPPHHPHPPHHHPHP 81
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 128 RYGTHTLTHHVPPPLYGPVPSHLHPPCIDCPHYVDHP 238
R+ H HH P P + P H HPP P + HP
Sbjct: 32 RHPHHHPPHHHPHPPHHHPPHHPHPPHHPHPPHHPHP 68
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 140 HTLTHHVPPPLYGPVPSHLHPPCIDCPHYVDHP 238
H H PP + P P H HPP P + HP
Sbjct: 30 HLRHPHHHPPHHHPHPPHHHPPHHPHPPHHPHP 62
>07_03_0354 -
17109041-17109289,17109423-17109555,17110560-17110738,
17111568-17111689,17111813-17111960
Length = 276
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 174 YRGGGTWCVSVCVPYRGCSSW*FGTGLGSRYWSNSVPSGGPSISKAADISGMPEKSMW 1
Y+GG T ++V V G S W F T + WS GP +A G K +W
Sbjct: 180 YQGGQTDILAVDVAQVGSSDWRFMTRVYGPVWSIDRAPNGPLQFRAVVTGGYDGKWVW 237
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +2
Query: 77 DQYLEPRPVPNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
D Y P VP E QP YG + PP P + HPP
Sbjct: 340 DHYYPPPDVPPV-EKQPHYGISSYGRDAPPTGAPPASGNQHPP 381
>01_05_0736 -
24760576-24760690,24760885-24761108,24761188-24761248,
24761909-24763992
Length = 827
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 89 EPRPVPNYHELQPRYGTHTLTHHVPPPLYGPV 184
EP P+P YH + RYG H +PP Y P+
Sbjct: 80 EPPPMPGYH--RSRYGGGRYGHGLPPSPYEPL 109
>10_08_0800 +
20660654-20660780,20660909-20661018,20661136-20661317,
20661521-20661656,20661746-20661994
Length = 267
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 174 YRGGGTWCVSVCVPYRGCSSW*FGTGLGSRYWSNSVPSGGPSISKAADISGMPEKSMW 1
Y+GG T V+V V G S+W F T WS + GP + G K +W
Sbjct: 171 YQGGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAGPLQFRVVVTGGYDGKWVW 228
>06_03_1310 + 29238644-29240260
Length = 538
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +2
Query: 86 LEPRPVPNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
L P P H + PR T PPP P PSHL PP
Sbjct: 378 LAPHRSPLPHHMPPRR-----TPPTPPPPSSPTPSHLPPP 412
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -2
Query: 275 DRVPMIEFTKRLRGDQRNVGNQYRAGGDGTVPDR---IEVAVRGALVYAFRIEVVARGNL 105
+RV I + +R+R D G R GG V +++ R ++ +I+VV RG
Sbjct: 494 ERVVRIPYHQRIRDDDDGGGRDERGGGRDAVTRMNTIVDLFSRATGIWFRQIDVVCRGGA 553
Query: 104 A 102
A
Sbjct: 554 A 554
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 92 PRPVPNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPP 205
P+P P ++ QP+ T PP Y P P PP
Sbjct: 119 PKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPP 156
>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
Length = 580
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Frame = +2
Query: 92 PRPVPNYHELQ--PRYGTHTLTHHVPPPLYGP----------VPSHLHPP 205
P P PN + L P Y + + H PP Y P +P + HPP
Sbjct: 99 PPPPPNQNNLPNIPNYNPYNVNHQYIPPFYYPPYPPYNTPWNIPPYQHPP 148
>11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887
Length = 372
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -2
Query: 272 RVPMIEFTKRLRGDQRNVGNQYRAGGDGTVPDRIEVAVRGALVYAF 135
RV M +T+ D N N Y GDG I V G L + F
Sbjct: 270 RVRMTGYTRARPSDHHNPDNTYVFAGDGRELHEIVVLAAGELEHRF 315
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 8 DFSGMPEISAALLMDGPPDGTELDQYLEPRPVPNYHELQPRYG 136
D + E+S+ +L G PD D L+ P H P G
Sbjct: 458 DCHNLSEVSSLILSSGSPDSVSQDMNLQASPALGGHYEAPMLG 500
>04_03_1022 - 21778315-21779007
Length = 230
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 PRPVPNYHELQPRYGTHTLTHHVPPPLYG-PVPSHLHPPCIDCPHYVDHP 238
P P P P H L PPP VP HL PP + DHP
Sbjct: 17 PPPPPATRARPPCSSAHLLPPPPPPPPPPPYVPPHLLPPSPAPQQWYDHP 66
>01_06_0883 + 32708037-32708558,32708627-32708911,32709661-32709675
Length = 273
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 611 ADSQVVLPLVISNSSVPSVMLIQNICSGG*KSRIAQKLLIIITLE 477
AD Q +LP S+S V LI+N SGG + +A I LE
Sbjct: 148 ADLQAILPTGASSSKVLVKSLIRNYMSGGKNTIVAAAANYIRELE 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,554,601
Number of Sequences: 37544
Number of extensions: 520721
Number of successful extensions: 1648
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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