Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22k17
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   0.86 
Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical...    29   2.6  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   6.0  
AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF002198-9|AAF99936.1|  450|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +2

Query: 92  PRPVPNYHELQPRYGTHTLTHHVPPPLYGPVPSHLHPPCIDCPH--YVDH 235
           P P P +    P           PPP Y P P H +PP    PH  Y+DH
Sbjct: 114 PAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPH-YPPPPPAPHSAYIDH 162


>Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -2

Query: 671 QTETHYCFTAEIGRAVVPIRADSQVVLPLVISNSSVPSVMLIQNICSGG*KSRIAQKLLI 492
           Q +  YC  A +   + P  AD+  + PLV  ++S  +V+ ++N   G  KS I   L  
Sbjct: 232 QNDVAYCLVAVLFLCIFPAEADAVWLRPLVTFSAS--AVIFLENKTCGTLKSSILCYLGD 289

Query: 491 IITLEMIIH 465
           I  +  ++H
Sbjct: 290 ISYVMYLVH 298


>AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -2

Query: 671 QTETHYCFTAEIGRAVVPIRADSQVVLPLVISNSSVPSVMLIQNICSGG*KSRIAQKLLI 492
           Q +  YC  A +   + P  AD+  + PLV  ++S  +V+ ++N   G  KS I   L  
Sbjct: 232 QNDVAYCLVAVLFLCIFPAEADAVWLRPLVTFSAS--AVIFLENKTCGTLKSSILCYLGD 289

Query: 491 IITLEMIIH 465
           I  +  ++H
Sbjct: 290 ISYVMYLVH 298


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 222 CGQSIQGGWRWDGTGPYRGGGTWCVSVCVPYRGCSS 115
           CG  +Q G R   +   R GG +CV     YR C++
Sbjct: 619 CGGGVQKGLRDCDSPKPRNGGKYCVGQRERYRSCNT 654


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 222 CGQSIQGGWRWDGTGPYRGGGTWCVSVCVPYRGCSS 115
           CG  +Q G R   +   R GG +CV     YR C++
Sbjct: 619 CGGGVQKGLRDCDSPKPRNGGKYCVGQRERYRSCNT 654


>AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical
           protein T05A8.6 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +1

Query: 10  FLGHAGNIRCFTNGRPTGRYRIRPVPRAQTGAKLPRATTSIRNAYTNAPRTATSIRSGTV 189
           FL      +C T G  T   R++PV     GA     TT+     T AP   T+    T 
Sbjct: 47  FLYETSQKKCTTCGTTTKPVRVKPVLTTTPGA--TTVTTTTAPTTTKAPDCTTTTAPTTT 104

Query: 190 PSP 198
            +P
Sbjct: 105 KAP 107


>AF002198-9|AAF99936.1|  450|Caenorhabditis elegans Hypothetical
           protein F35F10.11 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +2

Query: 5   IDFSGMPEISAALLMDGPPDGTELDQYLEPRPVPNYHELQPRYGTHTLTHHVPPPLYGPV 184
           ++  G+    +++L+   P    + QYL P        L P   T       PPP YGP+
Sbjct: 309 VNVDGLVRCESSILLGSVP----IHQYLPPAYYQQDPNLPPSKPTPI---GAPPPGYGPL 361

Query: 185 PSHLHPPCIDCPHYVD 232
           P+       D P+ +D
Sbjct: 362 PTDDSEKGADAPYPLD 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,824
Number of Sequences: 27780
Number of extensions: 407685
Number of successful extensions: 1133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)